Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02543 ATGATGATGATGATGAAAAGTAATTTAATGGTGGATGAGAATTTGTCTGTCTTGACTTGTGCTTCTGGAGAAACAATGACAAGAACTGAAATTTCCACTACTACCCCTATGTATTCTCATCAATCATCTTCTTCCATAAATCAACCAACACCACCGCTTCCACCGCTACCGCCGCCACCACCGTCAAAAAAGAAGCGAAATCTTCCAGGCAATCCAGACCCAGAAGCGGAAGTGATAGCCTTATCGCCAAAATCACTTCTGGCGACCAATAGATTCATATGCGAGATCTGTAAGAAGGGGTTTCAAAGAGATCAGAATTTGCAACTTCATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAACTGACATGTGTACATCATCATCCATCGAGGGCTCTGGGCGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAAAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACTCTCTTCTCCAGGAGGGACAGTTTCATAACCCACAGAGCATTTTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAGTAACCCAACTCCTAAAATTACATCCCACCTTTTCCCATCTATTAATTTCCCTCTTAAATTTGAACACCAAGACCCTTTTTTCCCTCCTCCTCCTCCTCCTCCTCCACCACCTTCTCATCAAAACCCTAATAACCCTACTTCTTCAATCGGGTTCGGATTACCCGGTCTCGGTCCGGGTCATCTTTTTGCGTCTTCTTGCCCTGCATGGGAAGTTAATAACAACAACAATAATTCATGTTCAGCTGAAATTGCTCCATTTTTTCATCACATGGTGGGTTTTGAAGAGGCGGCCTCATTTGAAGAAGCACTTAATGGGATATTGATGAGTAACAGTAATAGAGGCAATAAAAATGGTGGCAAAGGTGGCGGTGCTGCCGGAGAAATAACGAGGGATTTTCTGGGGGGGCTGAGACCTGTGGATTCTTCTATGTTTCAGAATCATGATCATCAGATGATAAATAACGACATGTCGAATTTGGATTCTCCTTCGACGTTTGGAGTGCACGGCCAGAACCAGAATACGACATGTTGGCGTCAAAATTAG 1227 43.36 MMMMMKSNLMVDENLSVLTCASGETMTRTEISTTTPMYSHQSSSSINQPTPPLPPLPPPPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPELTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNSNPTPKITSHLFPSINFPLKFEHQDPFFPPPPPPPPPPSHQNPNNPTSSIGFGLPGLGPGHLFASSCPAWEVNNNNNNSCSAEIAPFFHHMVGFEEAASFEEALNGILMSNSNRGNKNGGKGGGAAGEITRDFLGGLRPVDSSMFQNHDHQMINNDMSNLDSPSTFGVHGQNQNTTCWRQN* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25110072 25112752 - CsaV3_4G035690.1 Csa04g02543 528153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02543 408 SMART c2h2final6 92 114 IPR013087 -
Csa04g02543 408 SMART c2h2final6 168 188 IPR013087 -
Csa04g02543 408 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 18 231 - -
Csa04g02543 408 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Csa04g02543 408 MobiDBLite consensus disorder prediction 27 47 - -
Csa04g02543 408 Gene3D Classic Zinc Finger 127 216 - -
Csa04g02543 408 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Csa04g02543 408 MobiDBLite consensus disorder prediction 250 278 - -
Csa04g02543 408 MobiDBLite consensus disorder prediction 48 67 - -
Csa04g02543 408 MobiDBLite consensus disorder prediction 251 270 - -
Csa04g02543 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Csa04g02543 408 Gene3D Classic Zinc Finger 88 115 - -
Csa04g02543 408 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 231 - -
Csa04g02543 408 MobiDBLite consensus disorder prediction 27 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02543 Csa-Chr4:25110072 Csa05g00943 Csa-Chr5:7821071 5.46E-107 dispersed
Csa07g01699 Csa-Chr7:17501882 Csa04g02543 Csa-Chr4:25110072 6.77E-107 dispersed
Csa04g02543 Csa-Chr4:25110072 Csa07g02385 Csa-Chr7:21971899 2.73E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31636 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02543 K25870 - csv:101215280 750.355