Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02548 ATGGACAATTTTTTTCAATCAATGGTAGCGAGTGTGCCTATGGGAGTGGGTACAATATTGTTCACGACGTTTTGCCTCGTAGGAGGGGGTTTGGTTTATTTCTATGGACCGTACTGGGGAGTGAGAAGGGTGCCTGGTCCACCAGCTATTCCGCTGGTCGGACATCTTCCCTTGCTGGCTAAGTACGGCCCAGACGTTTTCTCTGTCTTCGCCTCCCAATATGGTCCTATCTTCAGGTTCCACATGGGTAGGCAGCCATTGATAATTATAGCAGACCCTGAGCTTTGTAAAGAAGTTGGTATCAAGAAATTCAAGGACATCCCAAACAGAAGTGTCCCTTCTCCAATATCAGCTTCCCCGCTTCATCAGAAAGGTCTTTTCTTCACAAGGGATGCAAGATGGTCGACAATGCGAAACACAATCCTCTCAGTCTATCAGCCCTCTCATCTAATGAGATTAATACCTACTATGCAATCAATCATCGAAACTGCAACTCAAAATCTCCATTCCTCTGTCGAGGAAGATATCCCTTTCTCTAATCTCTCCCTCAAATTGACCACCGATGTTATTGGAACAGCAGCCTTCGGTGTCAACTTTGGGCTCTCTAATCCACATGCTACCAAAACCACCAATGACCAAGACAGTAAAAATGATGAAGTTTCGGACTTCATCAATCAACATATCTACTCCACAACGCAGCTCAAGATGGATTTATCGGGTTCCTTCTCAATCATTTTGGGACTACTTGTCCCCATACTCCAAGAGCCATTTAGACAAGTCCTGAAGAGAATACCATTCACCATGGACTGGAAAGTTGACCGGACAAATCAGAAGTTGAGTGGTAGGCTTAATGAGATTGTGGACAAGAGAATGAAGTGTAACGATCGAGGTTCAAAAGATTTCTTATCACTCATTTTGAGAGCAAGAGAGTCAGAGACGGTATCAAGGAATGTCTTCACTCCAGACTACATCAGTGCAGTCACGTACGAACACCTACTTGCTGGGTCAGCTACCACAGCATTCACGTTGTCTTCTGTTGTATATTTAGTTGCTGGACATCCAGAAGTCGAGAAGAAGTTGCTTGAAGAGATTGACAACTTTGGTCCATCAGATCAGATACCAACAGCTAATGATCTTCAACAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAGTCTATGAGATTCTACACTGTTTCCCCTCTAGTAGCTAGAGAGACATCTAAAGATGTGGAGATTGGTGGATATCTTCTTCCAAAGGGGACATGGGTTTGGTTAGCACTTGGAGTTCTTGCCAAGGATCCAAAGAACTTTCCAGAACCAGATAAATTTAAGCCAGAAAGGTTTGATCCAAATGAGGAAGAGGAGAAACGAAGGCATCCCTATGCTTTAATCCCATTTGGAATTGGTCCTCGAGCATGCATTGGTCAAAAATTTGCCCTTCAGGAATTGAAGCTCTCTTTGATTCATTTGTATAGGAAGTTTGTATTTCGGCACTCCCTCTCCATGGAACAACCTCTTGAACTTGAGTATGGTGTCATTCTCAACTTCAAAAGTGGTGTCAAGCTCAGAGTGATCAACCGTAAATAG 1590 43.4 MDNFFQSMVASVPMGVGTILFTTFCLVGGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVFASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQPSHLMRLIPTMQSIIETATQNLHSSVEEDIPFSNLSLKLTTDVIGTAAFGVNFGLSNPHATKTTNDQDSKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPILQEPFRQVLKRIPFTMDWKVDRTNQKLSGRLNEIVDKRMKCNDRGSKDFLSLILRARESETVSRNVFTPDYISAVTYEHLLAGSATTAFTLSSVVYLVAGHPEVEKKLLEEIDNFGPSDQIPTANDLQQKFPYLDQVIKESMRFYTVSPLVARETSKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPDKFKPERFDPNEEEEKRRHPYALIPFGIGPRACIGQKFALQELKLSLIHLYRKFVFRHSLSMEQPLELEYGVILNFKSGVKLRVINRK* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25135109 25139414 + CsaV3_4G035740.1 Csa04g02548 528158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02548 529 Gene3D Cytochrome P450 35 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PANTHER CYTOCHROME P450 FAMILY PROTEIN 16 528 - -
Csa04g02548 529 SUPERFAMILY Cytochrome P450 37 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 Pfam Cytochrome P450 45 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS P450 superfamily signature 474 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS E-class P450 group I signature 387 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS E-class P450 group I signature 427 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa04g02548 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Csa04g02548 529 PANTHER THROMBOXANE-A SYNTHASE 16 528 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02548 Csa-Chr4:25135109 Csa01g00903 Csa-Chr1:5627169 7.80E-34 dispersed
Csa04g02548 Csa-Chr4:25135109 Csa02g00167 Csa-Chr2:1164961 9.82E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02548 K20771 - csv:101209772 1059.67