Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02549 ATGGGGGGTTCTGGGAAATGGATGAAGGTGTTTATAGGACAGAGGAAGTCTGATAAGGAAGACAAAGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAAGTTATGGAGGAGTCCATCAGGGGACTTGAGCACTGCTTGGAAGGGTTATAAAGGTGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTAGAGCCGCTGATTCTTTTACTGCTGCTGTTGCCACTGTCCTCCGTGCTCCACCGAGGAATTTCCGGGTTGTCCGCCAAGAATGGGCTGCAATTAGGATTCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTAGTGAGGGGTCGTTTGGTGCGGAAACAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGCGTCAGAGCACGTCGTGTGAGGATGTCAGTTGAGGGGCAGGCCGTACAACAATTGCTTAACGTACATCGCAGCAAGGCCGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAATACCAAACTCAACTTCACGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAAACAAGGTTGATGGAACAATCTCGCACCGAATCATTTGATGTCACTCCGCCTTCAAAGAGCTGTATAGAATCTGTTGTGTCTAAACATTCCAAAGGTTCTGAACCAGGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACAAGGATTTCTGCTAAACCTCCTTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTTTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCCGCATCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCAAGTTACATGAACCTTACAGAGTCAACAAAGGCGAAGCAGAAGACAAATAGTCATTTATCGCATCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGCTCTGATTCATCAGTCAATCCCTTCAAGCCATTGATGATGCCAACACGGTCGGATAAGAATGGAACAAAGCTAAGGTCGTGA 1338 46.19 MGGSGKWMKVFIGQRKSDKEDKEKLGSTKTKKWKLWRSPSGDLSTAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPRNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNVHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKAIPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFDVTPPSKSCIESVVSKHSKGSEPGLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMMPTRSDKNGTKLRS* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25138287 25140852 - CsaV3_4G035750.1 Csa04g02549 528159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02549 445 MobiDBLite consensus disorder prediction 306 326 - -
Csa04g02549 445 MobiDBLite consensus disorder prediction 389 429 - -
Csa04g02549 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Csa04g02549 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Csa04g02549 445 MobiDBLite consensus disorder prediction 342 382 - -
Csa04g02549 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Csa04g02549 445 MobiDBLite consensus disorder prediction 1 31 - -
Csa04g02549 445 MobiDBLite consensus disorder prediction 342 445 - -
Csa04g02549 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Csa04g02549 445 MobiDBLite consensus disorder prediction 12 30 - -
Csa04g02549 445 SMART iq_5 112 133 IPR000048 GO:0005515
Csa04g02549 445 SMART iq_5 89 111 IPR000048 GO:0005515
Csa04g02549 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Csa04g02549 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00786 Csa-Chr1:4969091 Csa04g02549 Csa-Chr4:25138287 5.17E-18 dispersed
Csa04g02549 Csa-Chr4:25138287 Csa05g01776 Csa-Chr5:21108732 4.93E-42 dispersed
Csa01g03281 Csa-Chr1:29130426 Csa04g02549 Csa-Chr4:25138287 5.03E-62 transposed
Csa04g02549 Csa-Chr4:25138287 Csa07g02382 Csa-Chr7:21946078 6.65E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02549 - - csv:101210019 850.506