Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02549 ATGGGGGGTTCTGGGAAATGGATGAAGGTGTTTATAGGACAGAGGAAGTCTGATAAGGAAGACAAAGAGAAGTTGGGTAGTACTAAAACTAAGAAATGGAAGTTATGGAGGAGTCCATCAGGGGACTTGAGCACTGCTTGGAAGGGTTATAAAGGTGGACATAAAGCAGCTTCTGAAGGCTCTGATTCTCCTAGAGCCGCTGATTCTTTTACTGCTGCTGTTGCCACTGTCCTCCGTGCTCCACCGAGGAATTTCCGGGTTGTCCGCCAAGAATGGGCTGCAATTAGGATTCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTAGTGAGGGGTCGTTTGGTGCGGAAACAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGCGTCAGAGCACGTCGTGTGAGGATGTCAGTTGAGGGGCAGGCCGTACAACAATTGCTTAACGTACATCGCAGCAAGGCCGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGAAGATATCAAATCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAATACCAAACTCAACTTCACGAACAAATGCTTCGATTTACGCTCTTAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCGAAGCCATGGGAAACAAGGTTGATGGAACAATCTCGCACCGAATCATTTGATGTCACTCCGCCTTCAAAGAGCTGTATAGAATCTGTTGTGTCTAAACATTCCAAAGGTTCTGAACCAGGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACAAGGATTTCTGCTAAACCTCCTTCAAGTGGGCAAGCTCGTTCTTGTTCTAGCCCAAGTTCTGATTTTTGGTATGATGAAAGCTCTGCTTCATCTTCAATCTGCACGTCTACAACTCCCGCATCGGGGCATGCTTTCTCAACCATTGAAAGAACAGAGAATGGCAGTTACAGTAGGCCAAGTTACATGAACCTTACAGAGTCAACAAAGGCGAAGCAGAAGACAAATAGTCATTTATCGCATCGAGTTCAAAGGCAGTCGATGGATGAGTATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCTAAGAGCAGTGCCGGCTCTGATTCATCAGTCAATCCCTTCAAGCCATTGATGATGCCAACACGGTCGGATAAGAATGGAACAAAGCTAAGGTCGTGA 1338 46.19 MGGSGKWMKVFIGQRKSDKEDKEKLGSTKTKKWKLWRSPSGDLSTAWKGYKGGHKAASEGSDSPRAADSFTAAVATVLRAPPRNFRVVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNVHRSKADLLKQAEEGWCDSKGTLEDIKSKLQMRQDGAFKRERAIAYSLVQKQLKAIPNSTSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTESFDVTPPSKSCIESVVSKHSKGSEPGLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSTIERTENGSYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNGDSKSSAGSDSSVNPFKPLMMPTRSDKNGTKLRS* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25138287 25140852 - CsaV3_4G035750.1 Csa04g02549 528159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02549 445 MobiDBLite consensus disorder prediction 306 326 - -
Csa04g02549 445 MobiDBLite consensus disorder prediction 389 429 - -
Csa04g02549 445 Pfam IQ calmodulin-binding motif 92 111 IPR000048 GO:0005515
Csa04g02549 445 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Csa04g02549 445 MobiDBLite consensus disorder prediction 342 382 - -
Csa04g02549 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 440 - -
Csa04g02549 445 MobiDBLite consensus disorder prediction 1 31 - -
Csa04g02549 445 MobiDBLite consensus disorder prediction 342 445 - -
Csa04g02549 445 ProSiteProfiles IQ motif profile. 114 141 IPR000048 GO:0005515
Csa04g02549 445 MobiDBLite consensus disorder prediction 12 30 - -
Csa04g02549 445 SMART iq_5 112 133 IPR000048 GO:0005515
Csa04g02549 445 SMART iq_5 89 111 IPR000048 GO:0005515
Csa04g02549 445 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Csa04g02549 445 PANTHER IQ-DOMAIN 5-RELATED 1 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02549 - - - csv:101210019 850.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00786 Csa-Chr1:4969091 Csa04g02549 Csa-Chr4:25138287 5.17E-18 dispersed
Csa04g02549 Csa-Chr4:25138287 Csa05g01776 Csa-Chr5:21108732 4.93E-42 dispersed
Csa01g03281 Csa-Chr1:29130426 Csa04g02549 Csa-Chr4:25138287 5.03E-62 transposed
Csa04g02549 Csa-Chr4:25138287 Csa07g02382 Csa-Chr7:21946078 6.65E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01776 . 1 470 IQD Protein Family AT3G52290 55.6 5.8e-104 374.8
Csa01g03281 . 1 406 IQD Protein Family AT3G22190 57.6 9.8e-96 347.4
Csa04g02549 . 1 438 IQD Protein Family AT2G26180 60.5 3.4e-117 418.7
Csa06g03677 . 1 274 IQD Protein Family AT2G33990 52.9 1.5e-62 236.5
Csa04g00841 . 217 392 IQD Protein Family AT2G33990 54.7 7.3e-49 191.0
Csa06g03677 . 1 232 IQD Protein Family AT3G15050 51.3 1.2e-56 216.9
Csa04g00841 . 220 393 IQD Protein Family AT3G15050 61.6 7.4e-54 207.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02549 Csa_Chr04 FPKM 9.122727 8.590367 0.872573 0.736241 5.464979 7.347556 5.201153 9.227943 8.547294 8.327854