Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02559 ATGGAGGATCGGGAGGGGGAAGAGAAGGCAGAGGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAATCATTATAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAGAGGCGATGGATGTTGGAAAGAAAGTTAGCCTCATCGGATGTGCCCAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAACGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTTTTAACCATCATTGGCAGGGGCGCTTTTGGTGAGGTTCGATTATGTCGTGAGAAGAAATCTGGTGATATATATGCAATGAAGAAGTTGAAAAAATCTGAAATGCTGATGAGGGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTGTTAGCTGAAGTTGCCAGCCACTGCATAGTGAAGCTTTATTACTCATTTCAGGATGCTGAATACTTGTATTTGATCATGGAATATCTTCCAGGTGGAGATATGATGACTCTTCTTATGAGAGAAGACACATTGACCGAAAATGTAGCTAAATTTTACATTGCACAAAGTGTTCTAGCAATAGAATCCATCCATAGGCACAACTATATTCACAGGGATATAAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAACTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTACACGAAAATAAAGCCATGGATGATGAAAATTTGGCAGAACCCATGGATATTGATGATAATAGGAGCAGTTGGAAGAGTCCCAGCGAACAGTTACACCATTGGCAAATGAACCGAAGGAAATTGGCATTTTCAACAGTGGGAACACCAGATTATATTGCTCCAGAAGTATTGCTTAAAAAAGGATATGGGATGGAGTGTGACTGGTGGTCCCTTGGTGCAATTATGTATGAAATGCTCGTAGGTTACCCTCCATTTTACTCCGATGATCCAATCACCACCTGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTGTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATACCAAATCAAAGCCCATCCATGGTTCAAAGATGTTGTCTGGGATAGGCTTTATGAAATGGAGGCAGCATTTAAGCCTGAGGTCAATGGAGAGCTCGATACTCAGAACTTTATGAAATTTGATGAATTGGATCCACCCATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGATATACATACAAGAACTTCGATGCTGTCAAAGGAGGGCTTCATGATGCTCAGAGATTATCAATGAAACAGCCTCCAATAGACGTATTAAATGGCACCGGGGGAGACTACACAACCGAACTAATAGGAAACGATGCCGAAATGCAAATGGTAGCAGTATCAGGAGACCCCATGTTGCCATAA 1545 41.81 MEDREGEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHENKAMDDENLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGGLHDAQRLSMKQPPIDVLNGTGGDYTTELIGNDAEMQMVAVSGDPMLP* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25208589 25214031 + CsaV3_4G035850.1 Csa04g02559 528169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02559 514 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674|GO:0005524|GO:0006468
Csa04g02559 514 CDD STKc_NDR_like 91 459 - -
Csa04g02559 514 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa04g02559 514 MobiDBLite consensus disorder prediction 1 20 - -
Csa04g02559 514 Gene3D Transferase(Phosphotransferase) domain 1 293 414 - -
Csa04g02559 514 Gene3D Transferase(Phosphotransferase) domain 1 177 243 - -
Csa04g02559 514 Gene3D Phosphorylase Kinase; domain 1 56 176 - -
Csa04g02559 514 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Csa04g02559 514 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02559 514 SMART serkin_6 93 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02559 514 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 508 - -
Csa04g02559 514 SMART pkinase_C_6 395 460 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa04g02559 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 508 - -
Csa04g02559 514 SUPERFAMILY Protein kinase-like (PK-like) 77 432 IPR011009 -
Csa04g02559 514 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02559 514 Pfam Protein kinase domain 285 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02559 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02559 Csa-Chr4:25208589 Csa07g01616 Csa-Chr7:16674560 0 dispersed
Csa01g00494 Csa-Chr1:3256458 Csa04g02559 Csa-Chr4:25208589 3.11E-78 transposed
Csa02g01948 Csa-Chr2:18251049 Csa04g02559 Csa-Chr4:25208589 0 transposed
Csa05g00547 Csa-Chr5:3529216 Csa04g02559 Csa-Chr4:25208589 5.97E-77 transposed
Csa06g03876 Csa-Chr6:30657025 Csa04g02559 Csa-Chr4:25208589 0 transposed
Csa01g02951 Csa-Chr1:25888812 Csa04g02559 Csa-Chr4:25208589 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78195 PF00069 Pkinase 4.40E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02559 K08790 - csv:101212228 1040.02