Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02565 ATGAGCCTGGATGCAGCTGAGGATGAATCAACCTCTGAAATTCATATTCCAGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCAGGTGTATCAACAGCCCTTTATCCTATTGTTGTTTTGAAAACTCGACTTCAGGTTTCATCTACCAAGGTATCATGCTTTAAAATGTCATATTCTATCATGCGTCATGAAGGCTTAAGAGGGTTTTACAGAGGGTTTGGAACCTCTCTAATGGGAACTATCCCAGCTCGGGCCTTTTACATGGGGGCTCTTGAAATTACCAAGAGTGGCGTTGGAAGCGCAACGATTAAGCTAGGCTTTTCAGACACCACAGCCATGGCTATAGCTAATGCTGCTGCAGGGTTGAGCTCAGCCATGGCTGCTCAATTGGTTTGGACTCCAATAGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGCAATATCAGTGCTAAAAACAACGTTTCTAATCTTAATTCTTGTGTCTATAGAAATGGTATCGACGCATTTAGAAAAATCATTTATGCTGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCTATATTGACATATGCTCCATCAAATGCAGTTTGGTGGACTTCTTACTCTGTGGCTCACAGACTCATTTGGAGTGGTCTGGGCTACTACACAAGTAAGAAGGATGAAGGTTGTATTAATGGTGGCTATGGGTTTAAAACAGATTCTAAGGCAACAGTGGCAGTTCAAGGGTTGAGTGCCGCCTTGGCTAGTGGAGTTTCTGCTATCATAACAATGCCACTTGATACCATCAAGACTAGATTACAAGTTTTGGATGGAGAAGAAAATGGCCAAAGACGCCCTTTGACGGCATTGCAGACCATACGGAACTTGATGAAGGAAGGTGGGCTGAATGCTTGTTATAGAGGGCTTGGACCAAGGTGGGCTTCAATGGCCATGTCGGCAACCACCATGATCACAACCTACGAGTTTCTCAAACGGCTGTCTACTAAGAGCCAAGATTGTTTGAGCAGAGGATGA 1056 43.18 MSLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPIVVLKTRLQVSSTKVSCFKMSYSIMRHEGLRGFYRGFGTSLMGTIPARAFYMGALEITKSGVGSATIKLGFSDTTAMAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISAKNNVSNLNSCVYRNGIDAFRKIIYADGLRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGYYTSKKDEGCINGGYGFKTDSKATVAVQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTALQTIRNLMKEGGLNACYRGLGPRWASMAMSATTMITTYEFLKRLSTKSQDCLSRG* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25248807 25255606 + CsaV3_4G035910.1 Csa04g02565 528175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02565 351 Pfam Mitochondrial carrier protein 251 344 IPR018108 -
Csa04g02565 351 Pfam Mitochondrial carrier protein 36 107 IPR018108 -
Csa04g02565 351 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Csa04g02565 351 Gene3D Mitochondrial carrier domain 28 348 IPR023395 -
Csa04g02565 351 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 347 - -
Csa04g02565 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Csa04g02565 351 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 347 - -
Csa04g02565 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 221 IPR018108 -
Csa04g02565 351 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085
Csa04g02565 351 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Csa04g02565 351 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Csa04g02565 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 340 IPR018108 -
Csa04g02565 351 SUPERFAMILY Mitochondrial carrier 23 337 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02565 Csa-Chr4:25248807 Csa05g03044 Csa-Chr5:30566402 1.35E-07 dispersed
Csa03g01544 Csa-Chr3:11534182 Csa04g02565 Csa-Chr4:25248807 8.43E-75 transposed
Csa02g01828 Csa-Chr2:17535391 Csa04g02565 Csa-Chr4:25248807 3.60E-17 wgd
Csa04g02565 Csa-Chr4:25248807 Csa07g02371 Csa-Chr7:21864313 4.36E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02565 K15121 - csv:101213436 659.833