Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02572 ATGGATGTGAACGGCAATAAACCAAAAGTCGTTCGAAGAAGTTCGTCTCAGAAGGAAGGTGAAAATGCTGGCCAAGTTGTGGTTGAAATTAGCAATAGCAGCGTTGTGTTTTCGAAAGAAACCAGAGATGGAAATAACTACTCTGTACTGAAACAAGACAGAGTCGATTCACAGAACAAAGAGTCGACTGGTTCGAGCATTGACCATGGCTTCGATTCACATATTCCTCCCACTGCCAATGAGCCCTTGAAAATTCCCAGTTCAAATAGAACCCTCACGCCTAGAAGATCTCTCAAAAGATCAATTCTATCGAGACCCAAATCCAGATTTGGGGAACAGTCACGTTACACCGATTCAGATGATAAGTTTGAGGAGAAACATGAGTCATTGAGAGAACAAACCGGTGCAACTTCATCCAGAAGCTCTTCTCTTAACACGCCGAAGGCCCAACCTGAGGAAGAAGATGAAGAGGATATAGTTAAGACAGAGCAGTTGAACAAAAAGCACAAGAAATGGAAGGTGAAGACAGTGATTAAGTGGATTGTAGTTTTTTGCCTAATTGGGTGCTTGGTGGCTAGTTTGACCGTTAACCGTTTGAAGAATTGCTTCTTTTTGGGTTTGGAGATTTGGAAATGGTGTTTACTTGCTACTGTGATTTTTTGTGGATTGATACTTACTCATTGGGCTATGAATGTGGTTGTCAGTTTGATTGAGGGAAACTTTTTGCTAAAGAAAAAAGTGCTCTATTTTGTTCATGGGTTAAAGAAGAGTGTCCAAGTGACCCTTTGGTTGGCATCGGTTCTTAGCACATGGGAGCCGTTGTTCAATCAGCGTAACCATAGGAGTTCAAGAACCACTGGGAAGATTCTGGATGCTATTACGTGGACTCTTGTTGCTCTTCTTATAGGGTCATTCCTATGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCATCCAAGTTCCATAAGGATCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAGCCCTCTTGGGGCCTCCATTAATGCAGGAAGTTGAAAGTGCTGCCAAGTTCAGCCGTTGTCTATTTAGTTGGGAGAATAAAAAATCAGACCTTAAGAAGATAATTGACACGGGAAAGATTCACCACCTGCAGCGAGAAAAAGTTTCATCTTGGACAATGAAGGTGTTGGTTGAGGCAGTTACAAGTTCGGCGATGTCAATCTCACAAATACTTGATGAAAGCTACTATAATGTTGACGATGGCGAGATTGACCATGAAATGGAAATTGCCAGTGTCGTTGCCTCCAAGATCCTTAGAAATGTTGCTCTTCCTGGGAAAAAGTTCATACAGGAAGAGGATCTTCTGCAATTCGTGGTCAAAGAAGAAATCGATCTTGTGTTACCACACTTCGAGGTAGATGAGACAAAGAGGATTGGCAAGAAAGCTCTCAAAAAATGGGTGGTGAAGGTTTTTCAAGAGAGAAAAACTCTAGCTCATGCCTTGAAAGACACTAAAACTGCTGTGAAGCAATTGAATAATTTGGTAACAGCGGTTGTTATAATAGTAATGGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAACGCTTGCAAGACTACATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCCGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTAAACAATGAGAAGGTGTATTATCCCAACTCAGTCTTGGCAACAAAGCCCATCAGTAACTACTACAGAAGTCCAGACATGAGCGAGACCACCGAATTCTCGATCAACTTCGCGACGCCACTAGAGAGGATTGGAGCCATGAAAGAAAAAATAAAGAGGTATTTGGAGAAAAATCCACAACACTGGCGTCCAAGTCATCTTATGGTGGTGAAAGAGATCGAAAACGTGAATGAGATCAAGATTGCTCTTTATTCTACCCATACCATGAGTTATCAAGACTATGGTGAGAAGATGAAACGAAGATCCGAGCTGGTGATGGAGTTGAAGAGAATATTTGAAGAACTGAAGATCAACTACACTCTTCTGCCTCAAACAATTCATCTCTTTCCATTCCAAGCTTGGATTGTGATGGATGTGAGCGGAAATAAAGGTATTCGAAGAGGTTCGTCTCAGAAGGAGAGTGGAAATGGAGGTGAAGTTGTGGTTCAGCTTAGCGGCGTTGAAAATGAGTGCTCTGTTCCGAAGCAAAACAGAGCCGATTCACAAACCAAAGAGCCGACCGGTTCAAGCGTTGGCTATGACAACGCTTCACCACTCGCTCCCACTCCGAATAAGCCACCGAAAATCCCAATTTCAAATGGAACCCTCACGCCCAGAAGGTCTCTGAGAAGATCAACTCTTTCCAAACCCAAATCCAGATTTGGGGAACAGTCATGTTTTATCGATTCAGACATGCTTGAGGAGGAGAATCATGTGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGCTCAAATCTCAACACGCCGAAGGCCCAACCTGAGGGAGAGGATGATGGGAATATGGGGTCGAATGCAAAGCACAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGATTGGAGTTTTTTGCATAATTAGTTGCTTGGTGGCTAGCTTGACTGTCAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGATTGATATTTACTCGTTGGGTTATGAATGTGGTTGTCTTTTTGATAGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTTACCCTTTGGTTGTCATTGGTTCTTGCTACATGGGGGTCCTTGTTTGATCGAAGAAACCATATGATTTCTAGTTCGAGGATCACTGCTAAGATTTTGGATGCTGTTACATGGACTTTGGCAAGCTTTCTTATAGGGGCATTCTTGTGGTTGATTAAAACATTGTTGCTGAAAATACTGGCCTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCTCTTTTCCTTCATCACGTTCTACAAACCCTCTTGAGGCCTCCTCTAGTGGAGGATGAAAGTACTGCCAAGTTCAGGTGTTGTCGATTTTGTTTTGAGAGTAAAAAACCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACGAGCTGAAGCGAGAAAAGGTTTCAGCTTGGACAATGAAGGTACTGGTTGATGCAGTTACTAGTTCAGAGATGTCGGTCTCACAAATACTTGACGATGAAAGCTACAGAGATGTCGCCGATGGTGATATCACAAATGAGATGAAAGTTGCCAAAGAAGCCGCGAAAGAGATCTTCAAAAATGTTGCTCTTCCTGGAAACAAGTTCATAGAGGAAAGGGATCTTCTGGAATTCATGATTCCAGAAGAAGTTAACCTTGTGTGGCCACACTTTGAGGTAGATAAGACAAGGAAGATTGACATGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACTCTAGCACATGCTTTGAAAGACACTAAAACAGCAGTGAAGCAATTGAACAATTTAATAACAGCGCTTATTATAGTAGTAACAGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTAACTCAGCTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTGATGCATCCATTTGATGTCGGGGACAGATGTGTTGTCGATGGTGTCCAGCTGTTGGTTGAAGAAATGAATATCTTGACAACAGTCTTCTTGAAGCTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGTGACACCGTCGAATTCTCAATCGGTTTTGAAACACCAGTGGAGAGGATTGGGGCCATGAAAGAACAAATAAAGAGGTATTTGGAGGAGAATCCACAACACTGGTATCCAAATCATAATGTGGTGGTGAAGGAGATCGAAAACGTAAATAAGATCAAGATTGCTCTTTATACAAATCACACCATGAATTTTCAAGACTGGGCTGAGAAGAACCGACGAAGAACCAAGCTCGTGATGGAGTTGAAGAGAATATTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTCCCAGTTGAGGGGCACTGA 4377 41.83 MDVNGNKPKVVRRSSSQKEGENAGQVVVEISNSSVVFSKETRDGNNYSVLKQDRVDSQNKESTGSSIDHGFDSHIPPTANEPLKIPSSNRTLTPRRSLKRSILSRPKSRFGEQSRYTDSDDKFEEKHESLREQTGATSSRSSSLNTPKAQPEEEDEEDIVKTEQLNKKHKKWKVKTVIKWIVVFCLIGCLVASLTVNRLKNCFFLGLEIWKWCLLATVIFCGLILTHWAMNVVVSLIEGNFLLKKKVLYFVHGLKKSVQVTLWLASVLSTWEPLFNQRNHRSSRTTGKILDAITWTLVALLIGSFLWLVKTLLLKILASKFHKDRFFDRIQESIFHHHVLQALLGPPLMQEVESAAKFSRCLFSWENKKSDLKKIIDTGKIHHLQREKVSSWTMKVLVEAVTSSAMSISQILDESYYNVDDGEIDHEMEIASVVASKILRNVALPGKKFIQEEDLLQFVVKEEIDLVLPHFEVDETKRIGKKALKKWVVKVFQERKTLAHALKDTKTAVKQLNNLVTAVVIIVMAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNACKTTFEALIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMSETTEFSINFATPLERIGAMKEKIKRYLEKNPQHWRPSHLMVVKEIENVNEIKIALYSTHTMSYQDYGEKMKRRSELVMELKRIFEELKINYTLLPQTIHLFPFQAWIVMDVSGNKGIRRGSSQKESGNGGEVVVQLSGVENECSVPKQNRADSQTKEPTGSSVGYDNASPLAPTPNKPPKIPISNGTLTPRRSLRRSTLSKPKSRFGEQSCFIDSDMLEEENHVSLREQIGATSSRSSNLNTPKAQPEGEDDGNMGSNAKHKKVKVKTVIKWIGVFCIISCLVASLTVNPLKNRFLWGLKVWKWCLLATVILCGLIFTRWVMNVVVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLSLVLATWGSLFDRRNHMISSSRITAKILDAVTWTLASFLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESLFLHHVLQTLLRPPLVEDESTAKFRCCRFCFESKKPDRKKVIDMGKIHELKREKVSAWTMKVLVDAVTSSEMSVSQILDDESYRDVADGDITNEMKVAKEAAKEIFKNVALPGNKFIEERDLLEFMIPEEVNLVWPHFEVDKTRKIDMKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLITALIIVVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNTCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFETPVERIGAMKEQIKRYLEENPQHWYPNHNVVVKEIENVNKIKIALYTNHTMNFQDWAEKNRRRTKLVMELKRIFEELKINYNLLPQTVHLFPVEGH* 1459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25284708 25295735 + CsaV3_4G035980.1 Csa04g02572 528182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02572 1458 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 759 1452 IPR016688 -
Csa04g02572 1458 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 24 729 IPR016688 -
Csa04g02572 1458 Gene3D - 1296 1345 IPR023408 -
Csa04g02572 1458 Gene3D - 573 622 IPR023408 -
Csa04g02572 1458 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 759 1452 - -
Csa04g02572 1458 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 24 729 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 859 887 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 82 98 - -
Csa04g02572 1458 SUPERFAMILY Sm-like ribonucleoproteins 1285 1345 IPR010920 -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 773 835 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 1 159 - -
Csa04g02572 1458 Pfam Mechanosensitive ion channel 514 719 IPR006685 GO:0016020|GO:0055085
Csa04g02572 1458 Pfam Mechanosensitive ion channel 1236 1442 IPR006685 GO:0016020|GO:0055085
Csa04g02572 1458 MobiDBLite consensus disorder prediction 773 798 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 134 148 - -
Csa04g02572 1458 SUPERFAMILY Sm-like ribonucleoproteins 562 622 IPR010920 -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 111 133 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 859 874 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 810 824 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 17 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02572 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101216955 1403.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00880 Csa-Chr2:8198351 Csa04g02572 Csa-Chr4:25284708 1.85E-177 dispersed
Csa04g02572 Csa-Chr4:25284708 Csa07g00130 Csa-Chr7:1148400 9.70E-141 dispersed
Csa04g02572 Csa-Chr4:25284708 Csa04g02574 Csa-Chr4:25300087 2.03E-150 proximal
Csa04g02572 Csa-Chr4:25284708 Csa04g02573 Csa-Chr4:25298716 4.14E-151 tandem
Csa01g02964 Csa-Chr1:25997051 Csa04g02572 Csa-Chr4:25284708 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00877 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.0 5.1e-152 534.6
Csa02g02208 . 10 675 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.3e-195 679.1
Csa03g00687 . 63 723 Mechanosensitive Ion Channel Family AT5G10490 56.4 1.8e-184 642.9
Csa02g02208 . 10 667 Mechanosensitive Ion Channel Family AT1G58200 58.7 2.2e-198 689.1
Csa03g00687 . 43 505 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G53470 52.2 1.2e-236 816.6
Csa06g01060 . 43 870 Mechanosensitive Ion Channel Family AT3G14810 50.3 1.1e-226 783.5
Csa07g00130 . 59 955 Mechanosensitive Ion Channel Family AT1G78610 55.9 2.9e-272 934.9
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G78610 56.3 6.3e-259 890.6
Csa04g02574 . 18 272 Mechanosensitive Ion Channel Family AT1G78610 50.6 8.4e-70 262.3
Csa07g00130 . 269 943 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.7e-221 764.2
Csa06g01060 . 217 877 Mechanosensitive Ion Channel Family AT2G17000 57.1 1.7e-216 749.6
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G19520 56.6 2.6e-83 307.0
Csa01g02964 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.1 4.2e-195 678.3
Csa04g02572 . 798 1452 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-191 665.2
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G12080 65.2 2.4e-97 353.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02572 Csa_Chr04 FPKM 296.85202 297.891632 411.769989 378.160553 275.658936 335.150787 246.11087 303.253479 335.495575 287.769623