Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02572 ATGGATGTGAACGGCAATAAACCAAAAGTCGTTCGAAGAAGTTCGTCTCAGAAGGAAGGTGAAAATGCTGGCCAAGTTGTGGTTGAAATTAGCAATAGCAGCGTTGTGTTTTCGAAAGAAACCAGAGATGGAAATAACTACTCTGTACTGAAACAAGACAGAGTCGATTCACAGAACAAAGAGTCGACTGGTTCGAGCATTGACCATGGCTTCGATTCACATATTCCTCCCACTGCCAATGAGCCCTTGAAAATTCCCAGTTCAAATAGAACCCTCACGCCTAGAAGATCTCTCAAAAGATCAATTCTATCGAGACCCAAATCCAGATTTGGGGAACAGTCACGTTACACCGATTCAGATGATAAGTTTGAGGAGAAACATGAGTCATTGAGAGAACAAACCGGTGCAACTTCATCCAGAAGCTCTTCTCTTAACACGCCGAAGGCCCAACCTGAGGAAGAAGATGAAGAGGATATAGTTAAGACAGAGCAGTTGAACAAAAAGCACAAGAAATGGAAGGTGAAGACAGTGATTAAGTGGATTGTAGTTTTTTGCCTAATTGGGTGCTTGGTGGCTAGTTTGACCGTTAACCGTTTGAAGAATTGCTTCTTTTTGGGTTTGGAGATTTGGAAATGGTGTTTACTTGCTACTGTGATTTTTTGTGGATTGATACTTACTCATTGGGCTATGAATGTGGTTGTCAGTTTGATTGAGGGAAACTTTTTGCTAAAGAAAAAAGTGCTCTATTTTGTTCATGGGTTAAAGAAGAGTGTCCAAGTGACCCTTTGGTTGGCATCGGTTCTTAGCACATGGGAGCCGTTGTTCAATCAGCGTAACCATAGGAGTTCAAGAACCACTGGGAAGATTCTGGATGCTATTACGTGGACTCTTGTTGCTCTTCTTATAGGGTCATTCCTATGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCATCCAAGTTCCATAAGGATCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAGCCCTCTTGGGGCCTCCATTAATGCAGGAAGTTGAAAGTGCTGCCAAGTTCAGCCGTTGTCTATTTAGTTGGGAGAATAAAAAATCAGACCTTAAGAAGATAATTGACACGGGAAAGATTCACCACCTGCAGCGAGAAAAAGTTTCATCTTGGACAATGAAGGTGTTGGTTGAGGCAGTTACAAGTTCGGCGATGTCAATCTCACAAATACTTGATGAAAGCTACTATAATGTTGACGATGGCGAGATTGACCATGAAATGGAAATTGCCAGTGTCGTTGCCTCCAAGATCCTTAGAAATGTTGCTCTTCCTGGGAAAAAGTTCATACAGGAAGAGGATCTTCTGCAATTCGTGGTCAAAGAAGAAATCGATCTTGTGTTACCACACTTCGAGGTAGATGAGACAAAGAGGATTGGCAAGAAAGCTCTCAAAAAATGGGTGGTGAAGGTTTTTCAAGAGAGAAAAACTCTAGCTCATGCCTTGAAAGACACTAAAACTGCTGTGAAGCAATTGAATAATTTGGTAACAGCGGTTGTTATAATAGTAATGGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAACGCTTGCAAGACTACATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCCGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTAAACAATGAGAAGGTGTATTATCCCAACTCAGTCTTGGCAACAAAGCCCATCAGTAACTACTACAGAAGTCCAGACATGAGCGAGACCACCGAATTCTCGATCAACTTCGCGACGCCACTAGAGAGGATTGGAGCCATGAAAGAAAAAATAAAGAGGTATTTGGAGAAAAATCCACAACACTGGCGTCCAAGTCATCTTATGGTGGTGAAAGAGATCGAAAACGTGAATGAGATCAAGATTGCTCTTTATTCTACCCATACCATGAGTTATCAAGACTATGGTGAGAAGATGAAACGAAGATCCGAGCTGGTGATGGAGTTGAAGAGAATATTTGAAGAACTGAAGATCAACTACACTCTTCTGCCTCAAACAATTCATCTCTTTCCATTCCAAGCTTGGATTGTGATGGATGTGAGCGGAAATAAAGGTATTCGAAGAGGTTCGTCTCAGAAGGAGAGTGGAAATGGAGGTGAAGTTGTGGTTCAGCTTAGCGGCGTTGAAAATGAGTGCTCTGTTCCGAAGCAAAACAGAGCCGATTCACAAACCAAAGAGCCGACCGGTTCAAGCGTTGGCTATGACAACGCTTCACCACTCGCTCCCACTCCGAATAAGCCACCGAAAATCCCAATTTCAAATGGAACCCTCACGCCCAGAAGGTCTCTGAGAAGATCAACTCTTTCCAAACCCAAATCCAGATTTGGGGAACAGTCATGTTTTATCGATTCAGACATGCTTGAGGAGGAGAATCATGTGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGCTCAAATCTCAACACGCCGAAGGCCCAACCTGAGGGAGAGGATGATGGGAATATGGGGTCGAATGCAAAGCACAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGATTGGAGTTTTTTGCATAATTAGTTGCTTGGTGGCTAGCTTGACTGTCAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGATTGATATTTACTCGTTGGGTTATGAATGTGGTTGTCTTTTTGATAGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTTACCCTTTGGTTGTCATTGGTTCTTGCTACATGGGGGTCCTTGTTTGATCGAAGAAACCATATGATTTCTAGTTCGAGGATCACTGCTAAGATTTTGGATGCTGTTACATGGACTTTGGCAAGCTTTCTTATAGGGGCATTCTTGTGGTTGATTAAAACATTGTTGCTGAAAATACTGGCCTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCTCTTTTCCTTCATCACGTTCTACAAACCCTCTTGAGGCCTCCTCTAGTGGAGGATGAAAGTACTGCCAAGTTCAGGTGTTGTCGATTTTGTTTTGAGAGTAAAAAACCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACGAGCTGAAGCGAGAAAAGGTTTCAGCTTGGACAATGAAGGTACTGGTTGATGCAGTTACTAGTTCAGAGATGTCGGTCTCACAAATACTTGACGATGAAAGCTACAGAGATGTCGCCGATGGTGATATCACAAATGAGATGAAAGTTGCCAAAGAAGCCGCGAAAGAGATCTTCAAAAATGTTGCTCTTCCTGGAAACAAGTTCATAGAGGAAAGGGATCTTCTGGAATTCATGATTCCAGAAGAAGTTAACCTTGTGTGGCCACACTTTGAGGTAGATAAGACAAGGAAGATTGACATGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACTCTAGCACATGCTTTGAAAGACACTAAAACAGCAGTGAAGCAATTGAACAATTTAATAACAGCGCTTATTATAGTAGTAACAGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTAACTCAGCTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTGATGCATCCATTTGATGTCGGGGACAGATGTGTTGTCGATGGTGTCCAGCTGTTGGTTGAAGAAATGAATATCTTGACAACAGTCTTCTTGAAGCTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGTGACACCGTCGAATTCTCAATCGGTTTTGAAACACCAGTGGAGAGGATTGGGGCCATGAAAGAACAAATAAAGAGGTATTTGGAGGAGAATCCACAACACTGGTATCCAAATCATAATGTGGTGGTGAAGGAGATCGAAAACGTAAATAAGATCAAGATTGCTCTTTATACAAATCACACCATGAATTTTCAAGACTGGGCTGAGAAGAACCGACGAAGAACCAAGCTCGTGATGGAGTTGAAGAGAATATTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTCCCAGTTGAGGGGCACTGA 4377 41.83 MDVNGNKPKVVRRSSSQKEGENAGQVVVEISNSSVVFSKETRDGNNYSVLKQDRVDSQNKESTGSSIDHGFDSHIPPTANEPLKIPSSNRTLTPRRSLKRSILSRPKSRFGEQSRYTDSDDKFEEKHESLREQTGATSSRSSSLNTPKAQPEEEDEEDIVKTEQLNKKHKKWKVKTVIKWIVVFCLIGCLVASLTVNRLKNCFFLGLEIWKWCLLATVIFCGLILTHWAMNVVVSLIEGNFLLKKKVLYFVHGLKKSVQVTLWLASVLSTWEPLFNQRNHRSSRTTGKILDAITWTLVALLIGSFLWLVKTLLLKILASKFHKDRFFDRIQESIFHHHVLQALLGPPLMQEVESAAKFSRCLFSWENKKSDLKKIIDTGKIHHLQREKVSSWTMKVLVEAVTSSAMSISQILDESYYNVDDGEIDHEMEIASVVASKILRNVALPGKKFIQEEDLLQFVVKEEIDLVLPHFEVDETKRIGKKALKKWVVKVFQERKTLAHALKDTKTAVKQLNNLVTAVVIIVMAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNACKTTFEALIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMSETTEFSINFATPLERIGAMKEKIKRYLEKNPQHWRPSHLMVVKEIENVNEIKIALYSTHTMSYQDYGEKMKRRSELVMELKRIFEELKINYTLLPQTIHLFPFQAWIVMDVSGNKGIRRGSSQKESGNGGEVVVQLSGVENECSVPKQNRADSQTKEPTGSSVGYDNASPLAPTPNKPPKIPISNGTLTPRRSLRRSTLSKPKSRFGEQSCFIDSDMLEEENHVSLREQIGATSSRSSNLNTPKAQPEGEDDGNMGSNAKHKKVKVKTVIKWIGVFCIISCLVASLTVNPLKNRFLWGLKVWKWCLLATVILCGLIFTRWVMNVVVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLSLVLATWGSLFDRRNHMISSSRITAKILDAVTWTLASFLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESLFLHHVLQTLLRPPLVEDESTAKFRCCRFCFESKKPDRKKVIDMGKIHELKREKVSAWTMKVLVDAVTSSEMSVSQILDDESYRDVADGDITNEMKVAKEAAKEIFKNVALPGNKFIEERDLLEFMIPEEVNLVWPHFEVDKTRKIDMKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLITALIIVVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNTCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFETPVERIGAMKEQIKRYLEENPQHWYPNHNVVVKEIENVNKIKIALYTNHTMNFQDWAEKNRRRTKLVMELKRIFEELKINYNLLPQTVHLFPVEGH* 1459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25284708 25295735 + CsaV3_4G035980.1 Csa04g02572 528182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02572 1458 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 759 1452 IPR016688 -
Csa04g02572 1458 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 24 729 IPR016688 -
Csa04g02572 1458 Gene3D - 1296 1345 IPR023408 -
Csa04g02572 1458 Gene3D - 573 622 IPR023408 -
Csa04g02572 1458 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 759 1452 - -
Csa04g02572 1458 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 24 729 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 859 887 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 82 98 - -
Csa04g02572 1458 SUPERFAMILY Sm-like ribonucleoproteins 1285 1345 IPR010920 -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 773 835 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 1 159 - -
Csa04g02572 1458 Pfam Mechanosensitive ion channel 514 719 IPR006685 GO:0016020|GO:0055085
Csa04g02572 1458 Pfam Mechanosensitive ion channel 1236 1442 IPR006685 GO:0016020|GO:0055085
Csa04g02572 1458 MobiDBLite consensus disorder prediction 773 798 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 134 148 - -
Csa04g02572 1458 SUPERFAMILY Sm-like ribonucleoproteins 562 622 IPR010920 -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 111 133 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 859 874 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 810 824 - -
Csa04g02572 1458 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00880 Csa-Chr2:8198351 Csa04g02572 Csa-Chr4:25284708 1.85E-177 dispersed
Csa04g02572 Csa-Chr4:25284708 Csa07g00130 Csa-Chr7:1148400 9.70E-141 dispersed
Csa04g02572 Csa-Chr4:25284708 Csa04g02574 Csa-Chr4:25300087 2.03E-150 proximal
Csa04g02572 Csa-Chr4:25284708 Csa04g02573 Csa-Chr4:25298716 4.14E-151 tandem
Csa01g02964 Csa-Chr1:25997051 Csa04g02572 Csa-Chr4:25284708 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02572 K22048 - csv:101216955 1403.27