Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02574 ATGATCGATGAAGCAGAAGTTAATCTTCTGTGGCCACACTTTGAGGTAGATAAGACAAAGAAGATTGACATGAAAGGCCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCAGTGAAGCAATTGAATAATTTAGTAGCAGCGCTTATTGTAGTAGTGACAGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTAACTCAGCTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGAATACATTTGAAGGTCTAATCTTTGTGTTTGTGATGCATCCATTTGATGTAGGGGACCTTTGTGTTGTCGATGGCATCCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCTACAAAACCCATCACTAACTACTACAGAAGTCCAGACATGGGTGACACCATCGAATTCTCAATCAGTTTCACAACGCCATTGGAGAAGATTGGGGTCATGAAAGAAAAAATAAAGAGGTATTTGGAGGATAATCCACAACACTGGTACCCAAATCATAGTGTGGTGGTGCAGGAGATTGAAAATGTAAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAACTTTCAAGATTGGACTGAGAAGAACCAACGAAGAACAGAGCTCGTGATGGAGTTAAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTCCCAATTGAGGGGCACTGA 837 40.14 MIDEAEVNLLWPHFEVDKTKKIDMKGLTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLVAALIVVVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNTCKNTFEGLIFVFVMHPFDVGDLCVVDGIQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTIEFSISFTTPLEKIGVMKEKIKRYLEDNPQHWYPNHSVVVQEIENVNKIKIALYTNHTMNFQDWTEKNQRRTELVMELKRIFEELKINYNLLPQTVHLFPIEGH* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25300087 25301577 + CsaV3_4G036000.1 Csa04g02574 528184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02574 278 Gene3D - 116 165 IPR023408 -
Csa04g02574 278 Pfam Mechanosensitive ion channel 57 262 IPR006685 GO:0016020|GO:0055085
Csa04g02574 278 SUPERFAMILY Sm-like ribonucleoproteins 105 165 IPR010920 -
Csa04g02574 278 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 272 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02574 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101217429 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02964 Csa-Chr1:25997051 Csa04g02574 Csa-Chr4:25300087 6.41E-116 dispersed
Csa04g02574 Csa-Chr4:25300087 Csa07g00130 Csa-Chr7:1148400 1.19E-81 dispersed
Csa04g02572 Csa-Chr4:25284708 Csa04g02574 Csa-Chr4:25300087 2.03E-150 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00877 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.0 5.1e-152 534.6
Csa02g02208 . 10 675 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.3e-195 679.1
Csa03g00687 . 63 723 Mechanosensitive Ion Channel Family AT5G10490 56.4 1.8e-184 642.9
Csa02g02208 . 10 667 Mechanosensitive Ion Channel Family AT1G58200 58.7 2.2e-198 689.1
Csa03g00687 . 43 505 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G53470 52.2 1.2e-236 816.6
Csa06g01060 . 43 870 Mechanosensitive Ion Channel Family AT3G14810 50.3 1.1e-226 783.5
Csa07g00130 . 59 955 Mechanosensitive Ion Channel Family AT1G78610 55.9 2.9e-272 934.9
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G78610 56.3 6.3e-259 890.6
Csa04g02574 . 18 272 Mechanosensitive Ion Channel Family AT1G78610 50.6 8.4e-70 262.3
Csa07g00130 . 269 943 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.7e-221 764.2
Csa06g01060 . 217 877 Mechanosensitive Ion Channel Family AT2G17000 57.1 1.7e-216 749.6
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G19520 56.6 2.6e-83 307.0
Csa01g02964 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.1 4.2e-195 678.3
Csa04g02572 . 798 1452 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-191 665.2
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G12080 65.2 2.4e-97 353.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02574 Csa_Chr04 FPKM 13.692805 12.851618 14.666411 15.98115 21.514322 17.559551 20.492517 12.191486 13.523311 13.552379