Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02574 ATGATCGATGAAGCAGAAGTTAATCTTCTGTGGCCACACTTTGAGGTAGATAAGACAAAGAAGATTGACATGAAAGGCCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCAGTGAAGCAATTGAATAATTTAGTAGCAGCGCTTATTGTAGTAGTGACAGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTCCTTCTAACTCAGCTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGAATACATTTGAAGGTCTAATCTTTGTGTTTGTGATGCATCCATTTGATGTAGGGGACCTTTGTGTTGTCGATGGCATCCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCTACAAAACCCATCACTAACTACTACAGAAGTCCAGACATGGGTGACACCATCGAATTCTCAATCAGTTTCACAACGCCATTGGAGAAGATTGGGGTCATGAAAGAAAAAATAAAGAGGTATTTGGAGGATAATCCACAACACTGGTACCCAAATCATAGTGTGGTGGTGCAGGAGATTGAAAATGTAAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAACTTTCAAGATTGGACTGAGAAGAACCAACGAAGAACAGAGCTCGTGATGGAGTTAAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTCCCAATTGAGGGGCACTGA 837 40.14 MIDEAEVNLLWPHFEVDKTKKIDMKGLTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLVAALIVVVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNTCKNTFEGLIFVFVMHPFDVGDLCVVDGIQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTIEFSISFTTPLEKIGVMKEKIKRYLEDNPQHWYPNHSVVVQEIENVNKIKIALYTNHTMNFQDWTEKNQRRTELVMELKRIFEELKINYNLLPQTVHLFPIEGH* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25300087 25301577 + CsaV3_4G036000.1 Csa04g02574 528184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02574 278 Gene3D - 116 165 IPR023408 -
Csa04g02574 278 Pfam Mechanosensitive ion channel 57 262 IPR006685 GO:0016020|GO:0055085
Csa04g02574 278 SUPERFAMILY Sm-like ribonucleoproteins 105 165 IPR010920 -
Csa04g02574 278 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 272 IPR016688 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02964 Csa-Chr1:25997051 Csa04g02574 Csa-Chr4:25300087 6.41E-116 dispersed
Csa04g02574 Csa-Chr4:25300087 Csa07g00130 Csa-Chr7:1148400 1.19E-81 dispersed
Csa04g02572 Csa-Chr4:25284708 Csa04g02574 Csa-Chr4:25300087 2.03E-150 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02574 K22048 - csv:101217429 545.043