Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02582 ATGAAGTCTGTGAAGAGGGCAGCCATGGCACTTCTTGTTGAGCTTGTTATCCTGGCTTTTCTTTTCTGTGCTACCGTTGGTGTGGTGGACTCTGATGATGGAGCAACGTTGTTGGAGATAAAGAAATCATACAGGGACGTGGATAATGTTCTTTATGATTGGACAAGCTCACCTTCATCAGATTTCTGTGTATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTATCTCTCTTAATCTTTCAGGTCTCAATCTGGATGGAGAGATTTCTCCTTCAATCGGAAACCTCAAAAGCCTGCAAACTCTGGATTTGAGGGGGAATGGTCTTTCTGGGCAAATTCCAGACGAGATTGGTGACTGTTCTTCGTTAATAAATATGGATTTATCTTTTAATGAGATTTATGGAGATATACCATTTTCCATTTCGAAGTTGAAGCAGCTGGAAATGCTTGTTCTGAAAAATAATAGACTGATTGGGCCGATCCCGTCAACCTTATCTCAGATTCCAAATTTGAAGGTCTTAGATTTGGCACAGAATAATCTTAGTGGAGAGATACCGAGACTAATTTACTGGAATGAAGTGCTGCAATATCTTGGTTTGCGTGGTAACAATTTGGTGGGCACACTCTCTCCAGATATGTGCCAGCTGACTGGTTTATGGTATTTTGATGTGAGAAACAACAGTTTAACTGGCAGCATACCACAAACAATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTCAGTGGAGAGATACCATTTAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTACAGGGTAATCAGCTATCAGGTCCCATTCCACCTGTAATTGGTCTGATGCAGGCGCTTGCTGTGTTAGATTTGAGCTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGAAATCTGACTTATACTGAGAAGTTGTACCTGCATAGTAATAAGCTCACTGGGCCCATTCCGGCAGAGCTCGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTGCTGGGAATATTCCAGCTGAGCTTGGGAAACTCACCGATTTGTTTGATCTAAATGTGGCTAATAACAATCTCGGAGGGCCGATCCCTGACAATCTTAGCTCTTGCATAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCCCCGTCTTTTCAGAGGCTAGAGAGTATGACTTACTTGAATCTTTCCTCAAATGATCTCCGAGGTCCTATACCAGTTGAGCTGTCTCGTATTGGCAATTTGGATACATTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCATCCTTTGGTGATCTGGAACATCTCCTGAAGCTAAATTTAAGTAGGAACCATTTAACGGGATTCATTCCAGCTGAATTTGGCAATTTAAGGAGTGTCATGGAAATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCCTGAGACTTGAGAACAACAACTTATCTGGGGATCTGACGTCGCTGATTAGCTGCCTAAGTCTTACAGAATTAAACGTATCTTATAACAATCTAGCTGGTGACATTCCCACAAGCAACAACTTCTCCAGGTTTTCATCTGATAGCTTCTTTGGAAATATTGCCCTCTGTGGATATTGGAATAGCAACAACTACCCCTGTCATGAAGCTCATACGACAGAGCGAGTGACCATATCTAAAGCCGCTATCCTGGGAATTGCTCTCGGTGCCCTTGTAATCCTTTTAATGATCCTTCTAACAGTGTGTCGTCCGAACAACACAATACCTTTTCCAGATGGATCACTTGACAAACCAGTTACTTACTCAACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGACATTATGAGGATGACTGAAAATTTGAATGAAAAGTACATTATTGGATATGGGGCTTCAAGCACAGTCTACAAATGTGTACTGAAGAATTGTAAACCCGTGGCTGTCAAAAAGCTTTACTCTCACCAGCCCCATAGCATGAAGGTGTTCGAGACCGAACTGGAAACTGTAGGTAGCATCAAACACAGAAATCTAGTCAGCCTCCAAGGATACTCCTTATCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGATCATCTACATGGCTCTGGCTCGACTAAGAAGAAAAAGCTTGACTGGGACACTCGGCTCAATATCGCACATGGAGCAGCTCAGGGACTGTCATATCTACACCATGATTGTAGCCCTCGCATCATCCACAGGGATGTTAAGTCATCTAACATTCTATTGGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGTATTGCCAAGAGTTTGTGCACCTCAAAGACATATACATCCACTTATATCATGGGAACCATTGGATACATCGATCCAGAGTATGCTCGGACTTCCCGACTTACTGAAAAGTCTGATGTTTACAGCTTTGGCATTGTGTTGCTTGAATTGCTCACAGGAAGGAAAGCAGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAATGCTGTAATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTAGCTCTCCTTTGCACTAAGAGGCAACCATCCGATCGACCAACAATGCACGAAGTAACACGCGTTATTGGAAGTCTTCTACCCTCTGCCGCAACACCAAAGCAAATACCAACCATAACAACCATTCCCCCATCTGCAAAATCCTCTTGCTACAAGGATGAGTATGCAAATCTAAAGACTCCGCATGTGCTGAACTGCCCAACCATGAGCACCTCAGACGCCCAGCTCTTCGCCAAGTTTGGAGAGGTAATATCACAAAACAGTGAGTAA 2976 42.84 MKSVKRAAMALLVELVILAFLFCATVGVVDSDDGATLLEIKKSYRDVDNVLYDWTSSPSSDFCVWRGVTCDNATLNVISLNLSGLNLDGEISPSIGNLKSLQTLDLRGNGLSGQIPDEIGDCSSLINMDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLSGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGPIPAELGNMTKLHYLELNDNHLAGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCINLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLISCLSLTELNVSYNNLAGDIPTSNNFSRFSSDSFFGNIALCGYWNSNNYPCHEAHTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLNEKYIIGYGASSTVYKCVLKNCKPVAVKKLYSHQPHSMKVFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSGSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIGSLLPSAATPKQIPTITTIPPSAKSSCYKDEYANLKTPHVLNCPTMSTSDAQLFAKFGEVISQNSE* 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25361069 25370825 + CsaV3_4G036080.1 Csa04g02582 528192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02582 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 977 - -
Csa04g02582 991 SUPERFAMILY Protein kinase-like (PK-like) 635 923 IPR011009 -
Csa04g02582 991 ProSiteProfiles Leucine-rich repeat profile. 172 194 IPR001611 GO:0005515
Csa04g02582 991 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Csa04g02582 991 SMART LRR_typ_2 409 433 IPR003591 -
Csa04g02582 991 SMART LRR_typ_2 337 361 IPR003591 -
Csa04g02582 991 SMART LRR_typ_2 457 480 IPR003591 -
Csa04g02582 991 SMART LRR_typ_2 170 194 IPR003591 -
Csa04g02582 991 SMART LRR_typ_2 98 122 IPR003591 -
Csa04g02582 991 SMART LRR_typ_2 218 242 IPR003591 -
Csa04g02582 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 12 977 - -
Csa04g02582 991 ProSiteProfiles Protein kinase domain profile. 657 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02582 991 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Csa04g02582 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Csa04g02582 991 Gene3D Phosphorylase Kinase; domain 1 639 732 - -
Csa04g02582 991 ProSitePatterns Protein kinases ATP-binding region signature. 663 686 IPR017441 GO:0005524
Csa04g02582 991 SUPERFAMILY L domain-like 267 555 - -
Csa04g02582 991 CDD STKc_IRAK 663 928 - -
Csa04g02582 991 Gene3D Ribonuclease Inhibitor 194 267 IPR032675 -
Csa04g02582 991 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
Csa04g02582 991 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Csa04g02582 991 Pfam Leucine rich repeat 367 422 IPR001611 GO:0005515
Csa04g02582 991 Pfam Leucine rich repeat 435 494 IPR001611 GO:0005515
Csa04g02582 991 SMART serkin_6 657 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02582 991 Pfam Protein kinase domain 659 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02582 991 Gene3D Transferase(Phosphotransferase) domain 1 733 938 - -
Csa04g02582 991 Gene3D Ribonuclease Inhibitor 268 584 IPR032675 -
Csa04g02582 991 SUPERFAMILY L domain-like 57 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02582 Csa-Chr4:25361069 Csa05g01100 Csa-Chr5:11224160 0 dispersed
Csa04g02582 Csa-Chr4:25361069 Csa06g03068 Csa-Chr6:26350693 4.65E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78197 PF00069 Pkinase 8.60E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02582 K20718 - csv:101214398 1905.18