Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02600 ATGGATGTGGAGGAATCAGTGAGACTAAGATTGGAGATATTGTATGCACAATTGGGGAAGAAACACACATTCGAGGAAGGAGTTTCTAACATCACTACTCTGCTTCAAGATCGTTATCCTGATGCTTCTCCTGATTTACGCAAATCGTTCTATTACATAATTTGCCGAGTTGCAACATTGTTGAGGTCACGATTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTCAAGCTTTTTCAGTTTTCTTTGACTCTGCTCTCTGATCAATCTGAGATAAAACACCTTCAGGCTTGCGTAGCTCAGGCCGAGGAAATTCTGCGCGTCATCGACGATCCACCTCCGCAGTCACAAAGTACTTCATCAAATACAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCGCAGTGGCTGGTGCAATCAAATCTCGTGACAGCCGCTGCAGCTGCGCTATCTAATGTTGAATCTTCTCAACCTTCGGGTGAGAACAACAACGTTTCTGAGTCAGTTGCTGGCATTCTTCTAGCTCTTAATGGAGATCTTGAAACTGTTATAAATGCGTTAAATGTTGACACGGTTGACCAACCACCGAAAGCCCCTCCTGCAAGTAAAGAAGTCGTCGCCAACCTTCCTGTAACTATTATAACAGATGAAATTCTTGCCAAGCTAGGAAAAGATGTACAATGTGCCATTTGCAAGGAAAACTTCGCTGTTGATGATAAGAAGCAAGAATTGCCTTGCAAACATGCATTCCACCAAGATTGTTTGAAGCCATGGCTGGACTCAAATAACTCTTGTCCAATCTGTCGGCACGAATTGCCCACCGATGACCAAGAATACGAAAACTGGAAGGAACGAGAGAGAGAGGCTGAAGAAGCAAGAAGAGGAGCTGAAAATGCTGTTCGTGGTGGTGAATATATGTATGTTTGA 942 44.59 MDVEESVRLRLEILYAQLGKKHTFEEGVSNITTLLQDRYPDASPDLRKSFYYIICRVATLLRSRFTAPGFWLSGLKLFQFSLTLLSDQSEIKHLQACVAQAEEILRVIDDPPPQSQSTSSNTGYLFEGHLTVDPEPPQPQWLVQSNLVTAAAAALSNVESSQPSGENNNVSESVAGILLALNGDLETVINALNVDTVDQPPKAPPASKEVVANLPVTIITDEILAKLGKDVQCAICKENFAVDDKKQELPCKHAFHQDCLKPWLDSNNSCPICRHELPTDDQEYENWKEREREAEEARRGAENAVRGGEYMYV* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25481803 25484212 - CsaV3_4G036260.1 Csa04g02600 528210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02600 313 PANTHER ABI3-INTERACTING PROTEIN 2-1 6 307 - -
Csa04g02600 313 SUPERFAMILY RING/U-box 227 280 - -
Csa04g02600 313 Pfam Ring finger domain 232 274 IPR001841 -
Csa04g02600 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Csa04g02600 313 SMART ring_2 233 273 IPR001841 -
Csa04g02600 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 307 - -
Csa04g02600 313 Coils Coil 284 304 - -
Csa04g02600 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 280 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00095 Csa-Chr2:639240 Csa04g02600 Csa-Chr4:25481803 1.11E-13 dispersed
Csa04g02600 Csa-Chr4:25481803 Csa01g00747 Csa-Chr1:4746270 9.82E-25 dispersed
Csa06g02296 Csa-Chr6:20621623 Csa04g02600 Csa-Chr4:25481803 1.37E-07 dispersed
Csa07g00697 Csa-Chr7:4987024 Csa04g02600 Csa-Chr4:25481803 9.27E-12 dispersed
Csa04g02600 Csa-Chr4:25481803 Csa05g00723 Csa-Chr5:4953167 5.81E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02600 K16274 - csv:101218065 599.742