Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02603 ATGGTCTGCGAGATGGAGAATGGTGTTATTGAAGATATGGACATTGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGTTCTTCACAACTGCAATACCTTGCAAAACAATGGGAGTATAAGCAAGCAAATGCAGTGCGCCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGAGATAAACGTCCTATTTCTATTTTGGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTCTTTCAAAGCAAGAGAGTTGAAATTGATGCAGAGTATGATACAGTGACATACTGGAAGCAACGAGCAATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCTGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCTTCACCAGTTGAGGAGTTGTCACAGATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCTGTTGTTTTTGGTCATCAGGACAAGGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTCGAAATTTTCAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAAAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAGATTCAGTTTGATACAGAATTGTTTGGGCTGAAGACCTTTTTGATTTATGTCGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTCCGTGAGGAGATTGCAGTGCAAAAGGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCATTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACGACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGATCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTACAGACTGCCGCCGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTCCCTATAGAGGTCATTGGGGATGTTCTTAGGATACGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCACAAGAAATCAACGGCTGATAACTCAACAGTTTCAATAAACTCTTTGCAAGATGGAACATGTCTTCTACCCTCTCAGAATGGCTTGTGTGGCCAAAAACACAGCGACATAAATCATTTGAATTGTGATGGACCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAACAGAGAAAACAAATCGTGTTCTCCCGAAACGACAGTATGGATACGCTGTGATGTGTATGACACAGGAATTGGAATACCGGAAAATGCGCTACCAACCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGTTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGTCATCTCACTGTTTCGAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCATACAAGGTTTCAAGCTCCTGCAGTCCTTCGGATGATTCAGACGAGATCTCGGATGATGAATCTACAAACGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTACGCTATCATCTTCTAATGGATCCACAAGGATCCCAAACTCATTGTTGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTAACTGAAGGTGTTCCTTATCCTATTCCCTTAAACAACATCGCCAATGCTGATGTTGTAACCTCAAGCAAATCACAATGTTCATCAAGTCATGTAAACCCAAATCTTGATAACCAAAACCAACCAGATACAAATGCTCGGTTGCAAAATGTCGGAGGTGTGAATTCCCTGCCCAAATTAGAAACAACAAAGTTAGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGAGGCAAGTAATCACTGCAGAAATAGCAGTAGTGGTCCTGAAGTAACGTTGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAACAAGACCAATATTATGGTGACGCAGTCCATGATGAAGAAGTTCGGGCAAAAAATTGACGTTGTAACTAATGGCATTGAAGCTGTTCGAGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTGATTCGTTCTTTTGAGGAAACAGGCAGTTGGGAAGCAGCTGTAAATGCTGGAATATTCCACCACCCAACTACTACACCTTCTTGGACTCCTTCCTCTTCCTCTTCCTCATCCTCCCGCAACAGGATGCCCATCATCGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGAAGAGTGTTATGAAAACGGGATGGACTCATTCGTATCAAAGCCAATCACCTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCACCTTTGTAA 2997 41.47 MVCEMENGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVFQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVSINSLQDGTCLLPSQNGLCGQKHSDINHLNCDGPGTPSKSETTMNGNRENKSCSPETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSSSCSPSDDSDEISDDESTNDEMTEGFFQFQPHSFSTLSSSNGSTRIPNSLLHTTGYPTSTKLNGLTEGVPYPIPLNNIANADVVTSSKSQCSSSHVNPNLDNQNQPDTNARLQNVGGVNSLPKLETTKLEDRLEKQSNKLQKTDQGKERSEASNHCRNSSSGPEVTLALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIFHHPTTTPSWTPSSSSSSSSRNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLPQPPL* 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25521271 25531013 + CsaV3_4G036290.1 Csa04g02603 528213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02603 998 MobiDBLite consensus disorder prediction 762 794 - -
Csa04g02603 998 Gene3D - 336 434 - -
Csa04g02603 998 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 994 - -
Csa04g02603 998 SMART REC_2 844 989 IPR001789 GO:0000160
Csa04g02603 998 Gene3D PAS domain 205 335 - -
Csa04g02603 998 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Csa04g02603 998 SUPERFAMILY CheY-like 844 994 IPR011006 -
Csa04g02603 998 Gene3D - 435 676 IPR036890 -
Csa04g02603 998 MobiDBLite consensus disorder prediction 762 837 - -
Csa04g02603 998 MobiDBLite consensus disorder prediction 798 827 - -
Csa04g02603 998 Coils Coil 181 208 - -
Csa04g02603 998 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Csa04g02603 998 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Csa04g02603 998 ProSiteProfiles Response regulatory domain profile. 845 993 IPR001789 GO:0000160
Csa04g02603 998 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Csa04g02603 998 Coils Coil 92 112 - -
Csa04g02603 998 Pfam Response regulator receiver domain 846 913 IPR001789 GO:0000160
Csa04g02603 998 Coils Coil 342 362 - -
Csa04g02603 998 Gene3D - 841 993 - -
Csa04g02603 998 SMART HKATPase_4 482 672 IPR003594 -
Csa04g02603 998 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Csa04g02603 998 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 994 - -
Csa04g02603 998 CDD REC_hyHK_CKI1_RcsC-like 846 989 - -
Csa04g02603 998 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Csa04g02603 998 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Csa04g02603 998 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Csa04g02603 998 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Csa04g02603 998 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Csa04g02603 998 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 672 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02603 Csa-Chr4:25521271 Csa05g00994 Csa-Chr5:9280299 9.23E-60 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31639 PF02518 HATPase_c 1.20E-27 CL0025 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02603 - - csv:101219807 1891.7