Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02603 ATGGTCTGCGAGATGGAGAATGGTGTTATTGAAGATATGGACATTGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGTTCTTCACAACTGCAATACCTTGCAAAACAATGGGAGTATAAGCAAGCAAATGCAGTGCGCCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGAGATAAACGTCCTATTTCTATTTTGGAAGAATCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTCTTTCAAAGCAAGAGAGTTGAAATTGATGCAGAGTATGATACAGTGACATACTGGAAGCAACGAGCAATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCTGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCTTCACCAGTTGAGGAGTTGTCACAGATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCTGTTGTTTTTGGTCATCAGGACAAGGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTCGAAATTTTCAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAAAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAGATTCAGTTTGATACAGAATTGTTTGGGCTGAAGACCTTTTTGATTTATGTCGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTCCGTGAGGAGATTGCAGTGCAAAAGGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCATTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACGACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGATCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTACAGACTGCCGCCGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTCCCTATAGAGGTCATTGGGGATGTTCTTAGGATACGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCACAAGAAATCAACGGCTGATAACTCAACAGTTTCAATAAACTCTTTGCAAGATGGAACATGTCTTCTACCCTCTCAGAATGGCTTGTGTGGCCAAAAACACAGCGACATAAATCATTTGAATTGTGATGGACCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAACAGAGAAAACAAATCGTGTTCTCCCGAAACGACAGTATGGATACGCTGTGATGTGTATGACACAGGAATTGGAATACCGGAAAATGCGCTACCAACCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGTTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGTCATCTCACTGTTTCGAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCATACAAGGTTTCAAGCTCCTGCAGTCCTTCGGATGATTCAGACGAGATCTCGGATGATGAATCTACAAACGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTACGCTATCATCTTCTAATGGATCCACAAGGATCCCAAACTCATTGTTGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTAACTGAAGGTGTTCCTTATCCTATTCCCTTAAACAACATCGCCAATGCTGATGTTGTAACCTCAAGCAAATCACAATGTTCATCAAGTCATGTAAACCCAAATCTTGATAACCAAAACCAACCAGATACAAATGCTCGGTTGCAAAATGTCGGAGGTGTGAATTCCCTGCCCAAATTAGAAACAACAAAGTTAGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGAGGCAAGTAATCACTGCAGAAATAGCAGTAGTGGTCCTGAAGTAACGTTGGCATTGGAACCCAGAATTCTTCTTGTTGAGGATAACAAGACCAATATTATGGTGACGCAGTCCATGATGAAGAAGTTCGGGCAAAAAATTGACGTTGTAACTAATGGCATTGAAGCTGTTCGAGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTGATTCGTTCTTTTGAGGAAACAGGCAGTTGGGAAGCAGCTGTAAATGCTGGAATATTCCACCACCCAACTACTACACCTTCTTGGACTCCTTCCTCTTCCTCTTCCTCATCCTCCCGCAACAGGATGCCCATCATCGCTATGACGGCGAATTCAATGTCAGAAAGCGCAGAAGAGTGTTATGAAAACGGGATGGACTCATTCGTATCAAAGCCAATCACCTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCACCTTTGTAA 2997 41.47 MVCEMENGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDIWQDIPRRKTDFVFQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVSINSLQDGTCLLPSQNGLCGQKHSDINHLNCDGPGTPSKSETTMNGNRENKSCSPETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSSSCSPSDDSDEISDDESTNDEMTEGFFQFQPHSFSTLSSSNGSTRIPNSLLHTTGYPTSTKLNGLTEGVPYPIPLNNIANADVVTSSKSQCSSSHVNPNLDNQNQPDTNARLQNVGGVNSLPKLETTKLEDRLEKQSNKLQKTDQGKERSEASNHCRNSSSGPEVTLALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIFHHPTTTPSWTPSSSSSSSSRNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLPQPPL* 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25521271 25531013 + CsaV3_4G036290.1 Csa04g02603 528213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02603 998 MobiDBLite consensus disorder prediction 762 794 - -
Csa04g02603 998 Gene3D - 336 434 - -
Csa04g02603 998 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 994 - -
Csa04g02603 998 SMART REC_2 844 989 IPR001789 GO:0000160
Csa04g02603 998 Gene3D PAS domain 205 335 - -
Csa04g02603 998 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Csa04g02603 998 SUPERFAMILY CheY-like 844 994 IPR011006 -
Csa04g02603 998 Gene3D - 435 676 IPR036890 -
Csa04g02603 998 MobiDBLite consensus disorder prediction 762 837 - -
Csa04g02603 998 MobiDBLite consensus disorder prediction 798 827 - -
Csa04g02603 998 Coils Coil 181 208 - -
Csa04g02603 998 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Csa04g02603 998 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Csa04g02603 998 ProSiteProfiles Response regulatory domain profile. 845 993 IPR001789 GO:0000160
Csa04g02603 998 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Csa04g02603 998 Coils Coil 92 112 - -
Csa04g02603 998 Pfam Response regulator receiver domain 846 913 IPR001789 GO:0000160
Csa04g02603 998 Coils Coil 342 362 - -
Csa04g02603 998 Gene3D - 841 993 - -
Csa04g02603 998 SMART HKATPase_4 482 672 IPR003594 -
Csa04g02603 998 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Csa04g02603 998 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 994 - -
Csa04g02603 998 CDD REC_hyHK_CKI1_RcsC-like 846 989 - -
Csa04g02603 998 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Csa04g02603 998 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Csa04g02603 998 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Csa04g02603 998 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Csa04g02603 998 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Csa04g02603 998 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 672 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02603 - - - csv:101219807 1891.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02603 Csa-Chr4:25521271 Csa05g00994 Csa-Chr5:9280299 9.23E-60 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00070 . 5 1187 Histidine Kinase Gene Family AT2G17820 65.2 0.0e+00 1443.3
Csa05g01966 CCT 24 987 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1332.8
Csa05g00994 CCT 3 953 Histidine Kinase Gene Family AT2G01830 72.3 0.0e+00 1307.0
Csa06g00827 . 58 1002 Histidine Kinase Gene Family AT2G01830 53.5 3.1e-276 948.3
Csa06g00945 . 304 1259 Histidine Kinase Gene Family AT2G01830 51.8 3.1e-268 921.8
Csa04g02603 . 1 993 Histidine Kinase Gene Family AT5G10720 57.5 1.5e-290 995.7
Csa06g02224 . 1 1120 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1832.0
Csa06g02220 . 3 1145 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1620.5
Csa07g00253 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.3 0.0e+00 1214.9
Csa03g01519 . 34 1121 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1196.4
Csa03g01519 . 13 1062 Histidine Kinase Gene Family AT2G18790 78.9 0.0e+00 1670.6
Csa01g02269 . 9 925 Histidine Kinase Gene Family AT2G18790 61.4 0.0e+00 1155.2
Csa06g02224 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1087.0
Csa07g00253 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.2 1.0e-313 1072.8
Csa06g02220 . 22 1049 Histidine Kinase Gene Family AT2G18790 52.1 4.3e-308 1054.3
Csa07g00253 . 18 1114 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1373.2
Csa03g01519 . 21 1123 Histidine Kinase Gene Family AT5G35840 53.3 0.0e+00 1153.3
Csa06g02224 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.8
Csa03g01519 . 3 1123 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1715.3
Csa01g02269 . 9 987 Histidine Kinase Gene Family AT4G16250 58.7 0.0e+00 1192.2
Csa06g02224 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1136.7
Csa07g00253 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1114.8
Csa01g02269 . 6 988 Histidine Kinase Gene Family AT4G18130 65.2 0.0e+00 1287.3
Csa03g01519 . 38 1121 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31639 PF02518 HATPase_c 1.20E-27 CL0025 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02603 Csa_Chr04 FPKM 0.0 0.0 0.0 0.0 0.737717 0.0 1.191979 0.0 0.0 0.0