Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02606 ATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGTGGAGGATTAAGTCAGAATGGAAAGTTCAGCTACGGTTATGCTAGCTCTCCAGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATTGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGTGGAGCGCGAGCTGCCGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGCCATCCAAAGTTCATTTCAGACACCAAATCCGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTGAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAACGTTGGCGATTCCAGAGCTGTTATTTGCCGGAGTGGCACTGCCATTGCTGTCTCTCGGGATCATAAGCCTGACCAAACTGATGAGCGACGGCGAATTGAGGATGCCGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTATTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCACTTGAGTTTCTTATACTTGCAAGTGATGGACTGTGGGATGTTGTCTCTAATGAGGAAGCTGTCGCTATGACTAAACCAATTCAGGACCCCGAAGAGGCAGCAAAAAGGTTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGTGTCGTCGTTCGTTTCTTGGCAAATCAAGGAAGTCCCTCTCGCGGAACGACTGGGTAA 882 45.69 MGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRSGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSRGTTG* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25550564 25554980 - CsaV3_4G036320.1 Csa04g02606 528216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02606 293 PANTHER ALPHABET, ISOFORM E-RELATED 3 287 - -
Csa04g02606 293 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Csa04g02606 293 Gene3D - 26 285 IPR036457 -
Csa04g02606 293 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 3 287 - -
Csa04g02606 293 SMART PP2C_4 24 278 IPR001932 -
Csa04g02606 293 SMART PP2C_SIG_2 45 280 IPR001932 -
Csa04g02606 293 CDD PP2Cc 33 280 IPR001932 -
Csa04g02606 293 Pfam Protein phosphatase 2C 63 273 IPR001932 -
Csa04g02606 293 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Csa04g02606 293 SUPERFAMILY PP2C-like 28 280 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01173 Csa-Chr2:11431223 Csa04g02606 Csa-Chr4:25550564 1.90E-22 dispersed
Csa03g03695 Csa-Chr3:32869564 Csa04g02606 Csa-Chr4:25550564 1.24E-47 dispersed
Csa04g02606 Csa-Chr4:25550564 Csa06g01923 Csa-Chr6:17350468 2.25E-130 dispersed
Csa06g02444 Csa-Chr6:21807730 Csa04g02606 Csa-Chr4:25550564 3.18E-19 dispersed
Csa07g01941 Csa-Chr7:19183066 Csa04g02606 Csa-Chr4:25550564 4.82E-42 dispersed
Csa04g02606 Csa-Chr4:25550564 Csa03g02203 Csa-Chr3:19119262 3.45E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02606 K17506 - csv:101216117 582.793