Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02620 | ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGTGGAAGCAGATTTGTTACTCCTCGCTTCGATTCCTCCTCCGCCGACTCTTCGTCTCTTCGTCCACATGGCGGCGTTGCTTCAATCCTCAAGACTGGCGATCTACGGTTTGAAGGTCGTGAGCGAATCCAATACACCCGAGACCAGCTTCTTCAGCTTAGAGAGGTTGCAACAGTTCCCGAAGATATCTTGAAAGTCAAACTAGAAGTTGAGTCTGAGATAGGTGGGGAGGATCAAACATGGAACCGTGCTGAAAGCAATCCGCAATCGCAATCTCAAAGCCGTTACTTTGAGCCAGACAATCGAGATTGGCGTGGCCGATCTGGGCAGGTTCCGGGCTCCACGGAGGAAGGCTCTTGGGATGCAAATAAGGATTTGTCTGGACAATCTGAGTCAAGGTTCCAAGACTCGAATAATAGAACTCAAGTTTCTGGTAACCAAGGGGTTGGTACACCTGCTCTTATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGACAAGGAACGGGTTTTGAAGACAGTTAAAGGTATACTTAATAAATTGACTCCGGAAAAGTTTGATTTACTCAAAGGTCAACTGATTGACTCTGGAATTACATCTGCTGATATTTTGAAGGATGTCATATCACTTATATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTCTGTGCTCTGATCTTAACGAGAAGCTTCCTTCATTTGCATCTGATGTGCCTGGAGAGAAAGATGTCACTTTTAAACGAGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACCTTAGGGCAGAAATCAGGCAGATGACTAGTCCTGAGCAGGAAATGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTGGGAAACATTCGCCTGATAGGTGAGCTTCTAAAACAGAAGATGGTACCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTTTTGGGGCCTGACCCCAAGATATGCCCTGCTGAGGAGAATGTTGAGGCTATTAGTCAGTTTTTTAACACGATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGGCGGGTCAATGATTTATATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAGCTGGGTTCCTAGACGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATACAGAGGCTGAAAAGAATCTAGGGCTTCGTCCAGGTTCAGTTGCAATGATGAGAAATGGCCGTAATGCCGAGGCACTTGGGGGATTAAGCCCTGGTGGTTTTCCTGTTGCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCTGGAGGGAGGAAAATGCCTGGTATGCCTGGATTTGAGTCGGACAATTGGGAAGTTCCTAGATCTCGATCAATGCCAAGGGGCGAGAGTGGAGGTCATACTCAGGCTTCTGCACGTGTCCAATCATCACTAATGGGCAAATCACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGTGGTGTAATTACAGGGAAAACAAGTGCTTTCCTACAAGGTAGTGCTGCGGCATCTCCTGCCCGACCACCAAGTTCCATGCCTGTTGCTCTCAGCCCTAAACCAGTTGCTCCAGTTGCACCTGTCGTATCTTCTCCTCAGAAGCCTGCCGCTCCTGCTGCATCCAACGTAGCTGAACTTCAAAAGAAAACCGTTTCGCTGCTTGAGGAGTACTTCAGTGTACGGATTCTTTATGAAGCCCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCATCCTGAGGTTGTTAAAAAATCCCTTACCATAGCACTTGAGAAGATTCCGCCACGCGTAGACCCAGTCGTTGAGCTTCTTGAGTACTTGCTTCGCAAGAATGTCTTGACTCCAAAGGATATAGGTACTGGGTGCTATCTATATGGGTCACAGATGGATGATATTGGCATCGATCTGCCAAAAGCGCCAAACAATTTCGGTGAGATTCTCGGGAAGTTGATTTTGATCGGGGGTCTGGATTTCACAGTTGTGAAGGAGATTCTCGAGAAGCTGGAAGATGACTACTTCCAGAAATCCATATTTGATGGTGCTATGAAGACCCTCAAATCTAGTCCTTCTGGAGAAGGAGTTCTCGCAACTCAAAGCGATGAGGTCCAGGCATGTGAAACTTTACTTGCGTGA | 2307 | 46.42 | MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILKTGDLRFEGRERIQYTRDQLLQLREVATVPEDILKVKLEVESEIGGEDQTWNRAESNPQSQSQSRYFEPDNRDWRGRSGQVPGSTEEGSWDANKDLSGQSESRFQDSNNRTQVSGNQGVGTPALIKAEVPWSVRRGNISDKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPSFASDVPGEKDVTFKRVLLNICQEAFEGADNLRAEIRQMTSPEQEMERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDLYFSRLKELTANTQLAPRLRFMVRDVLDLRANSWVPRREEVKAKTITEIHTEAEKNLGLRPGSVAMMRNGRNAEALGGLSPGGFPVARPGFGGMMPGMPGGRKMPGMPGFESDNWEVPRSRSMPRGESGGHTQASARVQSSLMGKSPSINSKYLPQGSGGVITGKTSAFLQGSAAASPARPPSSMPVALSPKPVAPVAPVVSSPQKPAAPAASNVAELQKKTVSLLEEYFSVRILYEALQCVEELKSPAYHPEVVKKSLTIALEKIPPRVDPVVELLEYLLRKNVLTPKDIGTGCYLYGSQMDDIGIDLPKAPNNFGEILGKLILIGGLDFTVVKEILEKLEDDYFQKSIFDGAMKTLKSSPSGEGVLATQSDEVQACETLLA* | 769 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25638230 | 25643893 | + | CsaV3_4G036460.1 | Csa04g02620 | 528230 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02620 | 768 | Pfam | MIF4G domain | 193 | 417 | IPR003890 | GO:0003723|GO:0005515 | |
Csa04g02620 | 768 | ProSiteProfiles | MI domain profile. | 602 | 724 | IPR003891 | - | |
Csa04g02620 | 768 | MobiDBLite | consensus disorder prediction | 25 | 39 | - | - | |
Csa04g02620 | 768 | Gene3D | - | 598 | 761 | - | - | |
Csa04g02620 | 768 | MobiDBLite | consensus disorder prediction | 503 | 542 | - | - | |
Csa04g02620 | 768 | SMART | if4_15 | 193 | 418 | IPR003890 | GO:0003723|GO:0005515 | |
Csa04g02620 | 768 | PANTHER | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 | 1 | 767 | - | - | |
Csa04g02620 | 768 | SMART | ma3_7 | 603 | 715 | IPR003891 | - | |
Csa04g02620 | 768 | SUPERFAMILY | ARM repeat | 186 | 421 | IPR016024 | - | |
Csa04g02620 | 768 | MobiDBLite | consensus disorder prediction | 97 | 115 | - | - | |
Csa04g02620 | 768 | MobiDBLite | consensus disorder prediction | 92 | 166 | - | - | |
Csa04g02620 | 768 | Gene3D | - | 184 | 419 | - | - | |
Csa04g02620 | 768 | SUPERFAMILY | ARM repeat | 597 | 755 | IPR016024 | - | |
Csa04g02620 | 768 | MobiDBLite | consensus disorder prediction | 130 | 166 | - | - | |
Csa04g02620 | 768 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Csa04g02620 | 768 | MobiDBLite | consensus disorder prediction | 511 | 542 | - | - | |
Csa04g02620 | 768 | Pfam | MA3 domain | 603 | 714 | IPR003891 | - | |
Csa04g02620 | 768 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 1 | 767 | IPR045208 | GO:0003743 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01052 | Csa-Chr3:8425934 | Csa04g02620 | Csa-Chr4:25638230 | 1.40E-06 | dispersed | |
Csa04g02620 | Csa-Chr4:25638230 | Csa06g01611 | Csa-Chr6:13859951 | 7.77E-08 | dispersed | |
Csa01g00918 | Csa-Chr1:5721955 | Csa04g02620 | Csa-Chr4:25638230 | 2.24E-09 | transposed | |
Csa01g01904 | Csa-Chr1:15915813 | Csa04g02620 | Csa-Chr4:25638230 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02620 | K03260 | - | csv:101211356 | 1406.35 |