Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02620 ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGCCTTCGTGGAAGCAGATTTGTTACTCCTCGCTTCGATTCCTCCTCCGCCGACTCTTCGTCTCTTCGTCCACATGGCGGCGTTGCTTCAATCCTCAAGACTGGCGATCTACGGTTTGAAGGTCGTGAGCGAATCCAATACACCCGAGACCAGCTTCTTCAGCTTAGAGAGGTTGCAACAGTTCCCGAAGATATCTTGAAAGTCAAACTAGAAGTTGAGTCTGAGATAGGTGGGGAGGATCAAACATGGAACCGTGCTGAAAGCAATCCGCAATCGCAATCTCAAAGCCGTTACTTTGAGCCAGACAATCGAGATTGGCGTGGCCGATCTGGGCAGGTTCCGGGCTCCACGGAGGAAGGCTCTTGGGATGCAAATAAGGATTTGTCTGGACAATCTGAGTCAAGGTTCCAAGACTCGAATAATAGAACTCAAGTTTCTGGTAACCAAGGGGTTGGTACACCTGCTCTTATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGACAAGGAACGGGTTTTGAAGACAGTTAAAGGTATACTTAATAAATTGACTCCGGAAAAGTTTGATTTACTCAAAGGTCAACTGATTGACTCTGGAATTACATCTGCTGATATTTTGAAGGATGTCATATCACTTATATTTGAGAAGGCCGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTCTGTGCTCTGATCTTAACGAGAAGCTTCCTTCATTTGCATCTGATGTGCCTGGAGAGAAAGATGTCACTTTTAAACGAGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACCTTAGGGCAGAAATCAGGCAGATGACTAGTCCTGAGCAGGAAATGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTGGGAAACATTCGCCTGATAGGTGAGCTTCTAAAACAGAAGATGGTACCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTTTTGGGGCCTGACCCCAAGATATGCCCTGCTGAGGAGAATGTTGAGGCTATTAGTCAGTTTTTTAACACGATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGGCGGGTCAATGATTTATATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAACTAGCACCTAGGTTGAGATTTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAGCTGGGTTCCTAGACGTGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATACAGAGGCTGAAAAGAATCTAGGGCTTCGTCCAGGTTCAGTTGCAATGATGAGAAATGGCCGTAATGCCGAGGCACTTGGGGGATTAAGCCCTGGTGGTTTTCCTGTTGCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCTGGAGGGAGGAAAATGCCTGGTATGCCTGGATTTGAGTCGGACAATTGGGAAGTTCCTAGATCTCGATCAATGCCAAGGGGCGAGAGTGGAGGTCATACTCAGGCTTCTGCACGTGTCCAATCATCACTAATGGGCAAATCACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGTGGTGTAATTACAGGGAAAACAAGTGCTTTCCTACAAGGTAGTGCTGCGGCATCTCCTGCCCGACCACCAAGTTCCATGCCTGTTGCTCTCAGCCCTAAACCAGTTGCTCCAGTTGCACCTGTCGTATCTTCTCCTCAGAAGCCTGCCGCTCCTGCTGCATCCAACGTAGCTGAACTTCAAAAGAAAACCGTTTCGCTGCTTGAGGAGTACTTCAGTGTACGGATTCTTTATGAAGCCCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCATCCTGAGGTTGTTAAAAAATCCCTTACCATAGCACTTGAGAAGATTCCGCCACGCGTAGACCCAGTCGTTGAGCTTCTTGAGTACTTGCTTCGCAAGAATGTCTTGACTCCAAAGGATATAGGTACTGGGTGCTATCTATATGGGTCACAGATGGATGATATTGGCATCGATCTGCCAAAAGCGCCAAACAATTTCGGTGAGATTCTCGGGAAGTTGATTTTGATCGGGGGTCTGGATTTCACAGTTGTGAAGGAGATTCTCGAGAAGCTGGAAGATGACTACTTCCAGAAATCCATATTTGATGGTGCTATGAAGACCCTCAAATCTAGTCCTTCTGGAGAAGGAGTTCTCGCAACTCAAAGCGATGAGGTCCAGGCATGTGAAACTTTACTTGCGTGA 2307 46.42 MQADQTVISLRPGGGGGLRGSRFVTPRFDSSSADSSSLRPHGGVASILKTGDLRFEGRERIQYTRDQLLQLREVATVPEDILKVKLEVESEIGGEDQTWNRAESNPQSQSQSRYFEPDNRDWRGRSGQVPGSTEEGSWDANKDLSGQSESRFQDSNNRTQVSGNQGVGTPALIKAEVPWSVRRGNISDKERVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPSFASDVPGEKDVTFKRVLLNICQEAFEGADNLRAEIRQMTSPEQEMERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDLYFSRLKELTANTQLAPRLRFMVRDVLDLRANSWVPRREEVKAKTITEIHTEAEKNLGLRPGSVAMMRNGRNAEALGGLSPGGFPVARPGFGGMMPGMPGGRKMPGMPGFESDNWEVPRSRSMPRGESGGHTQASARVQSSLMGKSPSINSKYLPQGSGGVITGKTSAFLQGSAAASPARPPSSMPVALSPKPVAPVAPVVSSPQKPAAPAASNVAELQKKTVSLLEEYFSVRILYEALQCVEELKSPAYHPEVVKKSLTIALEKIPPRVDPVVELLEYLLRKNVLTPKDIGTGCYLYGSQMDDIGIDLPKAPNNFGEILGKLILIGGLDFTVVKEILEKLEDDYFQKSIFDGAMKTLKSSPSGEGVLATQSDEVQACETLLA* 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25638230 25643893 + CsaV3_4G036460.1 Csa04g02620 528230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02620 768 Pfam MIF4G domain 193 417 IPR003890 GO:0003723|GO:0005515
Csa04g02620 768 ProSiteProfiles MI domain profile. 602 724 IPR003891 -
Csa04g02620 768 MobiDBLite consensus disorder prediction 25 39 - -
Csa04g02620 768 Gene3D - 598 761 - -
Csa04g02620 768 MobiDBLite consensus disorder prediction 503 542 - -
Csa04g02620 768 SMART if4_15 193 418 IPR003890 GO:0003723|GO:0005515
Csa04g02620 768 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 767 - -
Csa04g02620 768 SMART ma3_7 603 715 IPR003891 -
Csa04g02620 768 SUPERFAMILY ARM repeat 186 421 IPR016024 -
Csa04g02620 768 MobiDBLite consensus disorder prediction 97 115 - -
Csa04g02620 768 MobiDBLite consensus disorder prediction 92 166 - -
Csa04g02620 768 Gene3D - 184 419 - -
Csa04g02620 768 SUPERFAMILY ARM repeat 597 755 IPR016024 -
Csa04g02620 768 MobiDBLite consensus disorder prediction 130 166 - -
Csa04g02620 768 MobiDBLite consensus disorder prediction 1 44 - -
Csa04g02620 768 MobiDBLite consensus disorder prediction 511 542 - -
Csa04g02620 768 Pfam MA3 domain 603 714 IPR003891 -
Csa04g02620 768 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 767 IPR045208 GO:0003743
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01052 Csa-Chr3:8425934 Csa04g02620 Csa-Chr4:25638230 1.40E-06 dispersed
Csa04g02620 Csa-Chr4:25638230 Csa06g01611 Csa-Chr6:13859951 7.77E-08 dispersed
Csa01g00918 Csa-Chr1:5721955 Csa04g02620 Csa-Chr4:25638230 2.24E-09 transposed
Csa01g01904 Csa-Chr1:15915813 Csa04g02620 Csa-Chr4:25638230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02620 K03260 - csv:101211356 1406.35