Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02621 ATGGGTATATACCTTAGCAATCCCAAAACTGAGAAGTCCTCTGAAGACGGTGAGAATCGACGACTTAGATATGGACTATCATCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTGATCTGGATGCCAGCACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCGAAGTTCTGTGCAAAGTACCTACATCAGCAAGTGAAGAAAAATGAAACTTGTGCGGCTGGAGATATAGGAGCTTCTGTGCAGAGAGCATTCTTCAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCTGTTTTGGGAGATAGATTGAATAAGTTCACTGGCATGATAGAAGGTTTTATCTGGTCGCCAAAAAGCAGTGATGCAAATGACATAGCTGATGATTGGGCTTTTGAGGAGGGTCCGCACTCTGATTTTTCTGGCCCAACTTCTGGGTGTACTGCTTGTGTTGCAATTATTAGAAATAGCAAACTTGTTGTTGCAAATGCTGGTGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGGCCCACAGTCTCTCTAGAGATCACAAACCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCACGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATATTTAACTGCCGAAAAGCAAATTATTACTGCCAATCCTGACGTGACCACTGTTGAGCTTTGCGACGATGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAAGTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATACATGTTTGGCACCTTCCACAGCTATTGGCGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATATTCAATCAAATTCCTCGCTGGGTGATGGAACTTCACCCGTCGCCGCCCGTGCCGGTCCAGACAGTACAGAATCAGTACAAAAAGATGAGTTTAGCTAG 1095 43.65 MGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAVPDLDASTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNETCAAGDIGASVQRAFFRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGFIWSPKSSDANDIADDWAFEEGPHSDFSGPTSGCTACVAIIRNSKLVVANAGDSRCVLSRKGQAHSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKYLTAEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSESKLSVVVERVLDTCLAPSTAIGEGCDNMTMILVQFKKDIQSNSSLGDGTSPVAARAGPDSTESVQKDEFS* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25646974 25659201 + CsaV3_4G036470.1 Csa04g02621 528231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02621 364 PANTHER PROTEIN PHOSPHATASE 2C 1 342 IPR015655 GO:0004722|GO:0006470
Csa04g02621 364 CDD PP2Cc 23 329 IPR001932 -
Csa04g02621 364 MobiDBLite consensus disorder prediction 336 364 - -
Csa04g02621 364 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 342 - -
Csa04g02621 364 SMART PP2C_4 13 327 IPR001932 -
Csa04g02621 364 Gene3D - 1 330 IPR036457 -
Csa04g02621 364 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Csa04g02621 364 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Csa04g02621 364 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Csa04g02621 364 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Csa04g02621 364 SUPERFAMILY PP2C-like 3 330 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02621 Csa-Chr4:25646974 Csa07g02095 Csa-Chr7:20212401 0 dispersed
Csa04g02621 Csa-Chr4:25646974 Csa03g02203 Csa-Chr3:19119262 2.22E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02621 K17499 - csv:101211604 738.028