Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02621 | ATGGGTATATACCTTAGCAATCCCAAAACTGAGAAGTCCTCTGAAGACGGTGAGAATCGACGACTTAGATATGGACTATCATCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTGATCTGGATGCCAGCACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCGAAGTTCTGTGCAAAGTACCTACATCAGCAAGTGAAGAAAAATGAAACTTGTGCGGCTGGAGATATAGGAGCTTCTGTGCAGAGAGCATTCTTCAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCTGTTTTGGGAGATAGATTGAATAAGTTCACTGGCATGATAGAAGGTTTTATCTGGTCGCCAAAAAGCAGTGATGCAAATGACATAGCTGATGATTGGGCTTTTGAGGAGGGTCCGCACTCTGATTTTTCTGGCCCAACTTCTGGGTGTACTGCTTGTGTTGCAATTATTAGAAATAGCAAACTTGTTGTTGCAAATGCTGGTGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGGCCCACAGTCTCTCTAGAGATCACAAACCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCACGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATATTTAACTGCCGAAAAGCAAATTATTACTGCCAATCCTGACGTGACCACTGTTGAGCTTTGCGACGATGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAAGTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATACATGTTTGGCACCTTCCACAGCTATTGGCGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATATTCAATCAAATTCCTCGCTGGGTGATGGAACTTCACCCGTCGCCGCCCGTGCCGGTCCAGACAGTACAGAATCAGTACAAAAAGATGAGTTTAGCTAG | 1095 | 43.65 | MGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAVPDLDASTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNETCAAGDIGASVQRAFFRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGFIWSPKSSDANDIADDWAFEEGPHSDFSGPTSGCTACVAIIRNSKLVVANAGDSRCVLSRKGQAHSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKYLTAEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSESKLSVVVERVLDTCLAPSTAIGEGCDNMTMILVQFKKDIQSNSSLGDGTSPVAARAGPDSTESVQKDEFS* | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25646974 | 25659201 | + | CsaV3_4G036470.1 | Csa04g02621 | 528231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02621 | 364 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 342 | IPR015655 | GO:0004722|GO:0006470 | |
Csa04g02621 | 364 | CDD | PP2Cc | 23 | 329 | IPR001932 | - | |
Csa04g02621 | 364 | MobiDBLite | consensus disorder prediction | 336 | 364 | - | - | |
Csa04g02621 | 364 | PANTHER | PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED | 1 | 342 | - | - | |
Csa04g02621 | 364 | SMART | PP2C_4 | 13 | 327 | IPR001932 | - | |
Csa04g02621 | 364 | Gene3D | - | 1 | 330 | IPR036457 | - | |
Csa04g02621 | 364 | Pfam | Protein phosphatase 2C | 155 | 313 | IPR001932 | - | |
Csa04g02621 | 364 | Pfam | Protein phosphatase 2C | 23 | 103 | IPR001932 | - | |
Csa04g02621 | 364 | ProSitePatterns | PPM-type phosphatase domain signature. | 52 | 60 | IPR000222 | GO:0043169 | |
Csa04g02621 | 364 | ProSiteProfiles | PPM-type phosphatase domain profile. | 23 | 329 | IPR001932 | - | |
Csa04g02621 | 364 | SUPERFAMILY | PP2C-like | 3 | 330 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02621 | Csa-Chr4:25646974 | Csa07g02095 | Csa-Chr7:20212401 | 0 | dispersed | |
Csa04g02621 | Csa-Chr4:25646974 | Csa03g02203 | Csa-Chr3:19119262 | 2.22E-30 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02621 | K17499 | - | csv:101211604 | 738.028 |