Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02632 | ATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACTTACCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCACGGCCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAGTGGTGATACCAAGGATGATTTGAGACTTCCAACTGATGATAATCTGCTCAAACAGATTAAGGAAGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTCAAGGATATTGGCCCGAAGTAG | 480 | 46.46 | MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTDDNLLKQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPK* | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25702900 | 25705901 | - | CsaV3_4G036580.1 | Csa04g02632 | 528242 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02632 | 159 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 156 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Csa04g02632 | 159 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 156 | IPR012340 | - | |
Csa04g02632 | 159 | Gene3D | - | 86 | 158 | IPR012340 | - | |
Csa04g02632 | 159 | CDD | S1_eIF5A | 86 | 156 | - | - | |
Csa04g02632 | 159 | PANTHER | BNAA07G09420D PROTEIN | 1 | 156 | - | - | |
Csa04g02632 | 159 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Csa04g02632 | 159 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 153 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Csa04g02632 | 159 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa04g02632 | 159 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Csa04g02632 | 159 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Csa04g02632 | 159 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Csa04g02632 | 159 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Csa04g02632 | 159 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g02491 | Csa-Chr5:26602098 | Csa04g02632 | Csa-Chr4:25702900 | 1.61E-111 | transposed | |
Csa01g01887 | Csa-Chr1:15847906 | Csa04g02632 | Csa-Chr4:25702900 | 5.98E-110 | wgd | |
Csa02g02429 | Csa-Chr2:21449707 | Csa04g02632 | Csa-Chr4:25702900 | 1.72E-106 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02632 | K03263 | K02180 | csv:101213295 | 325.479 |