Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02634 ATGGCCTTATTTCGCAAATTCTTTTATCGGAAGCCACCCGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTGTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTGGGGCAACTTCGTGAGAGTTTGACAGACGCCTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGCATCATAGCCTCATTACTAATATATTATCTGTATATGATATGACTGTCATGGACTATCCTAGACAATATGAAGGCTGCCCTTTACTCACCATGGAGATGATCCACCATTTCTTGAGATCCAGTGAAAGCTGGCTCTCACTTGGGCAACAGAATGTACTTTTAATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAGTATGCAGGGGAGCAGAAAACTTTGGATATGATTTACAAGCAAGCACCTAGAGAACTTTTGCAGTTGATGTCACCACTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGGCTCTGAATGGCCTCCTCTTGACAGAGCCCTTACACTAGACTGCATAATTATTAGATGTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCGTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAAATGATGTTCCGAGTTATGTTTAACACAGCATTTATCAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATTTTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATTCTTCCGCTTCACTTATTTCAATTGAATTGCCAAATATTGAAGAGAAAGATGGCCTTCCAATCGAAGCCTTTGCTCGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAACGTGCTTCAGAAAATAACAGCTTCAAATTTACTTCAAGAGAAGCTGCTTAGTTCTGGCTCTTTAGACAGAAGGCAATTACTTGACTTATCTCTTGAAAAACTAATCTTGGAATCAGAGACATCTGAAGAAAATATTAGAAGTCCCCGATTGAAGATACAGACAAAGTCTAAGCTTTCTTCCGAATTATCTAAAGCTGCAAGTTCAGTGATATCAAAACTTGAACCCTCAGAATTGCAGGTTGCTCTCCAACTACCACCTCAGTCTAAAATAATCACTCAACGAATACCTCAACCGTCATTGTCTACGCCAGTCTCCTTCCGTAGTTCTATGCAAGGTTCACCTCGCCCTATACTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTACTACATGATCATTCCGATTTTATTGGTAAAGAACTTATACATTCAGGGACAACATCTTCACCATCATCTGCTCGGTTGAGTCCAACTGCTCTAGATTCACCTAGAGATATTCAACGTAGTAACCTTCCTATTTCTCCTCTCCCTCTAGTATTAGACGCAAGATCTTCATTAGAAAATTCTTTGACCACCGCATCAACTACAACCATTCCTGATCCACTGCCCCTTCACCAACTTTCTTTGAAACCTATTAAATATTTAGTTTCTCAACCGACTCAAACCACATCACAAGTGAGAAGTCAATTATCACCATCTTCATTACAACCAACTTCTGCCTCTTATATTGGGGAATCCCCACCCTCTCTCAATGATAGCGAAGCTTCAATATCATCTTCCTCTCCTTTGTCAAGATCATCTCCATCTTCTTGTACTAAAGAATTAATTTCCGTTTCCACTCCTCCTCCTCCTCCTCCCCTCCCCCATTTTGATTCACCTTCAGCTTTAGCAACATCTCCACCTTCTAGTAGGACGAATGGCACTAGTGTTGTCTCGCCGACATCAGTGCCTCCGCCCCAACCTCCACCTCCACCTCCTTCATGGAAGGACTCTACGAACACATTCATGCATGTCCCCCCAGCTCCACCTCCAGCCCCACCCTTGCCTCCATCTTCTTTCAGTTCTACATTTACTTGTGGTTCTAGTATCACGCCTTTAGGGCCACCACCACCGCCACCACCTCCTTCAAGTCATGCACCACAAGATTTTGCCACAGTAGTTAGGACCTTGATGAATGCATCTGGCCCTCCACCTCCCCCACCTCCCTCGTTACATTCATCTCTAGGTTCTAATACTGTATCTTCAGTGCCGCCCCCGCCACCCCCTCCTAGTCTTGCAGTAAATGTTGCAACAACCGTTAACTTGACACATGTCAGCCCCCCTCCTCCTCCTCCTCCACCATTAGCAAATTCTGGACCCACCTTATGTCCAGGTGTTGCAACGTCAGCTCCGCCTGCTCCACCTCCTCCAGGTTTCTCAATGGAAGGTTCTGCAACACATGCTCCACCTGCACCCCCTCCTCCAGGTCTCAGCGGTAATAAACTCTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCGTTAATAACAGCAACATACCTTCTGTTCCTGGACCACCTTCCAGTGCTCTATTCAATGCAAAGGGACGTGGCCTTGGACGTATGAACTCCAAAAACCAGTCTCAACCTAAAAGATCCAATCTAAAGCCTTATCACTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACCGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCAGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCTGGAGGTTCGGGAAATTCAAATCGCCGAGCCTCAGGGCCAAAATCAGATAAAGTTCATTTGATTGAACTTCGCCGGGCCTATAATTGTGAAATTATGCTTTCTAAAGTTAAGATTCCTTTGCCTGACATGATGTGTTCAGTCCTTGCATTGGATGACTCGGCATTAGATGTGGATCAGGTTGACAACCTAATCAAGTTTTGTCCAACAAAGGAAGAAATGGAATTACTAAAGGGGTACGGTGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTTCTGAATTAATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTATTTTCTTTCAAGATACAATTCCGATTGCAGGCCTCTGACCTTAGAAATAGTCTGAATACTATTAATTCGGCATCTGAAGAGATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCACTGGGTAATGCTTTGAACCATGGAACGGCTAGAGGTTCCGCTATTGGATTTCGGCTTGATAGTCTTCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTTCTTGCTGAAAAGCTGCCAGAACTTCTAGATTTTCCGAAGGACCTTGTGAGTTTGGAAGCTTCTACGAAGATACAACTGAAGTACTTGGCAGAAGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTCCAGGAATTGGCCAATTCAGAGAATGATGGACCCATTTCTGAAATTTTCTGCCGGACTTTAAAAGGCTTCCTTTCTCATGCCGAGGCAGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCCGATGCACTGGCTCTTTATTTCGGCGAAGATCCTGCACGTTGCCCTTTTGAGCAAGTTGTTTCTACACTGTTCAATTTTGTGAGGATGTTTGCGCGAGCGCACGAAGAAAACTGTAAGCAGCTTGAATATGAAAAGAAAAAAGCACAGAAAGAAGCGGCAGAAAGGGAGAAGTTGAAGCTCGGTACTGCGAAAAAGGAGTCAGGATTCTTAATGCAGACTCAAATCTAG 4041 43.55 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGEHHSLITNILSVYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIIRCIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDSSASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLLSSGSLDRRQLLDLSLEKLILESETSEENIRSPRLKIQTKSKLSSELSKAASSVISKLEPSELQVALQLPPQSKIITQRIPQPSLSTPVSFRSSMQGSPRPILRYHSAPSALGITALLHDHSDFIGKELIHSGTTSSPSSARLSPTALDSPRDIQRSNLPISPLPLVLDARSSLENSLTTASTTTIPDPLPLHQLSLKPIKYLVSQPTQTTSQVRSQLSPSSLQPTSASYIGESPPSLNDSEASISSSSPLSRSSPSSCTKELISVSTPPPPPPLPHFDSPSALATSPPSSRTNGTSVVSPTSVPPPQPPPPPPSWKDSTNTFMHVPPAPPPAPPLPPSSFSSTFTCGSSITPLGPPPPPPPPSSHAPQDFATVVRTLMNASGPPPPPPPSLHSSLGSNTVSSVPPPPPPPSLAVNVATTVNLTHVSPPPPPPPPLANSGPTLCPGVATSAPPAPPPPGFSMEGSATHAPPAPPPPGLSGNKLSNVNGTSSQSHVGVNNSNIPSVPGPPSSALFNAKGRGLGRMNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDSALDVDQVDNLIKFCPTKEEMELLKGYGGDKDNLGKCEQFFSELMKVPRVESKLRVFSFKIQFRLQASDLRNSLNTINSASEEIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGPISEIFCRTLKGFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFARAHEENCKQLEYEKKKAQKEAAEREKLKLGTAKKESGFLMQTQI* 1347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25716565 25725470 + CsaV3_4G036600.1 Csa04g02634 528244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02634 1346 MobiDBLite consensus disorder prediction 981 1002 - -
Csa04g02634 1346 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Csa04g02634 1346 ProSiteProfiles SERTA domain profile. 404 451 IPR009263 -
Csa04g02634 1346 Gene3D Formin, FH2 domain 920 1312 IPR042201 -
Csa04g02634 1346 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 825 840 - -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 702 717 - -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 752 767 - -
Csa04g02634 1346 ProSiteProfiles Formin homology-2 (FH2) domain profile. 927 1327 IPR015425 -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 981 998 - -
Csa04g02634 1346 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 611 665 - -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 611 940 - -
Csa04g02634 1346 SUPERFAMILY Formin homology 2 domain (FH2 domain) 853 1321 - -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 880 908 - -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 922 936 - -
Csa04g02634 1346 Gene3D - 196 341 - -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 530 556 - -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 725 739 - -
Csa04g02634 1346 MobiDBLite consensus disorder prediction 683 701 - -
Csa04g02634 1346 SMART it6_source 665 1346 IPR015425 -
Csa04g02634 1346 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Csa04g02634 1346 PANTHER FORMIN-J 784 1338 - -
Csa04g02634 1346 PANTHER FORMIN-J 1 765 - -
Csa04g02634 1346 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Csa04g02634 1346 Pfam Formin Homology 2 Domain 929 1301 IPR015425 -
Csa04g02634 1346 Coils Coil 1302 1329 - -
Csa04g02634 1346 SMART PTEN_C2_2 197 337 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02634 - - - csv:101214019 2146.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00260 Csa-Chr1:1613373 Csa04g02634 Csa-Chr4:25716565 0 dispersed
Csa01g00571 Csa-Chr1:3670613 Csa04g02634 Csa-Chr4:25716565 3.35E-134 dispersed
Csa01g01729 Csa-Chr1:13913836 Csa04g02634 Csa-Chr4:25716565 3.47E-67 dispersed
Csa01g01730 Csa-Chr1:13925596 Csa04g02634 Csa-Chr4:25716565 0 dispersed
Csa04g02634 Csa-Chr4:25716565 Csa02g01413 Csa-Chr2:13503958 9.03E-30 dispersed
Csa06g02964 Csa-Chr6:25642802 Csa04g02634 Csa-Chr4:25716565 1.76E-07 dispersed
Csa07g00734 Csa-Chr7:5208981 Csa04g02634 Csa-Chr4:25716565 7.44E-08 dispersed
Csa03g02724 Csa-Chr3:26029083 Csa04g02634 Csa-Chr4:25716565 1.42E-151 transposed
Csa01g01880 Csa-Chr1:15792317 Csa04g02634 Csa-Chr4:25716565 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02718 . 182 1057 FH2 protein (formin) Gene Family AT3G25500 51.0 5.5e-188 655.2
Csa05g00980 . 466 942 FH2 protein (formin) Gene Family AT3G25500 65.6 2.1e-163 573.5
Csa02g01413 . 473 892 FH2 protein (formin) Gene Family AT3G25500 63.0 8.5e-141 498.4
Csa01g02771 . 494 886 FH2 protein (formin) Gene Family AT3G25500 51.5 9.2e-103 372.1
Csa03g02718 . 625 1074 FH2 protein (formin) Gene Family AT2G43800 58.9 1.7e-137 487.3
Csa02g01413 . 455 908 FH2 protein (formin) Gene Family AT2G43800 53.7 2.5e-125 446.8
Csa02g02708 . 346 644 FH2 protein (formin) Gene Family AT4G15200 52.3 1.9e-52 203.8
Csa03g02281 . 440 586 FH2 protein (formin) Gene Family AT4G15200 65.5 1.4e-47 187.6
Csa03g02281 . 7 968 FH2 protein (formin) Gene Family AT5G54650 50.4 3.6e-172 602.4
Csa02g02708 . 498 961 FH2 protein (formin) Gene Family AT5G54650 62.7 2.0e-159 560.1
Csa03g02718 . 631 1032 FH2 protein (formin) Gene Family AT5G54650 50.6 1.0e-102 371.7
Csa02g01413 . 36 911 FH2 protein (formin) Gene Family AT5G67470 56.4 1.2e-228 790.0
Csa03g02718 . 612 1064 FH2 protein (formin) Gene Family AT5G67470 59.3 6.0e-135 478.8
Csa05g00980 . 504 924 FH2 protein (formin) Gene Family AT5G67470 62.6 1.2e-127 454.5
Csa01g02771 . 494 888 FH2 protein (formin) Gene Family AT5G67470 52.1 2.9e-105 380.2
Csa05g02377 . 332 817 FH2 protein (formin) Gene Family AT1G59910 51.7 4.4e-125 446.0
Csa03g02718 . 652 1033 FH2 protein (formin) Gene Family AT5G48360 52.1 1.4e-100 364.4
Csa02g01413 . 470 868 FH2 protein (formin) Gene Family AT3G05470 52.0 3.4e-106 383.3
Csa03g02281 . 446 863 FH2 protein (formin) Gene Family AT3G05470 50.8 3.4e-106 383.3
Csa03g02724 . 1 1187 FH2 protein (formin) Gene Family AT1G31810 68.7 0.0e+00 1162.9
Csa01g01729 . 117 257 FH2 protein (formin) Gene Family AT1G31810 66.9 2.7e-45 181.4
Csa01g00260 CCT 1281 1602 FH2 protein (formin) Gene Family AT5G07650 75.2 1.1e-129 461.1
Csa04g02634 . 1008 1330 FH2 protein (formin) Gene Family AT5G07650 63.8 1.0e-109 394.8
Csa01g01880 . 892 1211 FH2 protein (formin) Gene Family AT5G07650 62.0 1.4e-108 391.0
Csa03g02724 . 853 1184 FH2 protein (formin) Gene Family AT5G07650 58.7 1.8e-106 384.0
Csa01g00571 CCT 983 1222 FH2 protein (formin) Gene Family AT5G07650 73.8 8.2e-96 348.6
Csa01g00260 CCT 1208 1595 FH2 protein (formin) Gene Family AT5G07770 69.4 1.1e-140 497.3
Csa04g02634 . 933 1322 FH2 protein (formin) Gene Family AT5G07770 58.6 2.0e-118 423.3
Csa01g01880 . 815 1203 FH2 protein (formin) Gene Family AT5G07770 56.7 2.0e-115 413.3
Csa03g02724 . 789 1178 FH2 protein (formin) Gene Family AT5G07770 55.0 2.9e-114 409.5
Csa01g00571 CCT 896 1222 FH2 protein (formin) Gene Family AT5G07770 63.7 7.7e-107 384.8
Csa04g02634 . 925 1333 FH2 protein (formin) Gene Family AT3G32400 75.3 7.8e-169 590.5
Csa01g01880 . 786 1212 FH2 protein (formin) Gene Family AT3G32400 65.0 7.6e-148 520.8
Csa01g00260 CCT 1208 1602 FH2 protein (formin) Gene Family AT3G32400 65.5 1.4e-141 500.0
Csa03g02724 . 789 1183 FH2 protein (formin) Gene Family AT3G32400 66.2 4.0e-141 498.4
Csa01g00571 CCT 876 1218 FH2 protein (formin) Gene Family AT3G32400 57.6 4.7e-105 378.6
Csa01g01729 . 81 257 FH2 protein (formin) Gene Family AT3G32400 57.0 1.7e-46 184.1
Csa04g02634 . 1 1333 FH2 protein (formin) Gene Family AT2G25050 55.2 0.0e+00 1181.0
Csa01g01730 . 1 438 FH2 protein (formin) Gene Family AT2G25050 61.3 1.1e-152 538.1
Csa01g01729 . 82 257 FH2 protein (formin) Gene Family AT2G25050 59.8 2.0e-50 198.4
Csa01g00260 CCT 1209 1602 FH2 protein (formin) Gene Family AT5G07780 63.0 3.6e-123 438.7
Csa04g02634 . 934 1323 FH2 protein (formin) Gene Family AT5G07780 54.4 4.4e-105 378.6
Csa03g02724 . 790 1179 FH2 protein (formin) Gene Family AT5G07780 52.2 3.8e-101 365.5
Csa01g01880 . 822 1203 FH2 protein (formin) Gene Family AT5G07780 53.3 4.2e-100 362.1
Csa01g00571 CCT 907 1222 FH2 protein (formin) Gene Family AT5G07780 57.8 4.1e-95 345.5
Csa01g00260 CCT 1 1611 FH2 protein (formin) Gene Family AT5G07740 62.1 0.0e+00 1121.3
Csa01g01730 . 1 402 FH2 protein (formin) Gene Family AT5G07740 57.0 5.8e-128 456.4
Csa01g01729 . 99 257 FH2 protein (formin) Gene Family AT5G07740 59.4 8.0e-45 180.3
Csa01g00260 CCT 1280 1609 FH2 protein (formin) Gene Family AT5G07760 74.7 3.1e-128 456.4
Csa01g01880 . 891 1211 FH2 protein (formin) Gene Family AT5G07760 64.4 8.4e-110 395.2
Csa04g02634 . 1007 1330 FH2 protein (formin) Gene Family AT5G07760 65.2 8.4e-110 395.2
Csa03g02724 . 863 1184 FH2 protein (formin) Gene Family AT5G07760 60.4 6.2e-105 379.0
Csa01g00571 CCT 982 1222 FH2 protein (formin) Gene Family AT5G07760 73.9 9.0e-96 348.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02634 Csa_Chr04 FPKM 8.607538 10.930908 9.366226 9.457111 11.036541 11.22848 11.263807 15.432226 14.38763 15.370332