Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02637 ATGGAGGAGAGGAATGTTCTGTTTGGTAAATATGAGATTGGGAGGTTGCTTGGGAAGGGGACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAGTCTGGTGAAAGCGTTGCGATCAAGGTTTTGAATAAGGATCAGGTTAAGAAGGAAGGGATGATGGAGCAGATCAAGCGTGAGATCTCCGTTATGCGTCTTGTTCGTCATCCGAACATCGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGTGGTGGTGAGCTTTTTGCTAAAGTCGCTAGAGGAAAACTCAAAGAAGACGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCAGTCGATTACTGTCATAGTCGTGGAGTCTCTCACCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATTTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGTAACGACGGTCTTCTCCACACGCAGTGCGGTACTCCGGCCTACGTCGCACCGGAAGTACTACGAAGAAAGGGATACGATGGAGCAAAAGCCGATATCTGGTCTTGTGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAGGTTTTCAAAGCCGAATTCGAATGTCCGCCGTGGTTCTCGGCTGAATCGAAGCGTTTGATTTCAAAAATCCTCGTCGTAGATCCAGGTAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGAAGAGATTTCTCAAGATCCCTCTCGTTCACGATGAAAGAAACAATCGCAGCGAAAACAGAGGATTCCGATTTCGAAAGTCCAAAACTATCGACGCCAAAATTCTTCAATGCGTTCGAATTAATATCGTCGATGTCGTCCGGATTCGATCTATCGAGTTTATTCGAGAACAAAAGGAAGACAGGATCCATGTTCACATCGAGATGCTCGGTATCAACAATCATGGAAAAGATCGAGACGGTGGCGAAGAAACTAAGCTTCAAGGTATCGGAAGCGAAAGATTTCAAGCTCCGACTACAGGGTCCATCGGAAGGAAGAAAAGGAAAGCTGTCTGTGACGGCGGAGGTGTTCGAAATAGCACCGGAAGTCGCCATAGTAGAATTCTCAAAGTCGTCCGGTGATACTCTGGAATATTCGAAGTTTTGTGAGGAAGACGTTCGGCCGGCTCTGAAGGACATCGTTTGGACGTGGCAAGGTGATTGTGTCCCTAACACCGACGGACGTCACAGCCAATTTAACGGCGATGAATTTTTGTGA 1332 46.02 MEERNVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRRDFSRSLSFTMKETIAAKTEDSDFESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKKLSFKVSEAKDFKLRLQGPSEGRKGKLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDCVPNTDGRHSQFNGDEFL* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25743103 25745726 - CsaV3_4G036630.1 Csa04g02637 528247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02637 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Csa04g02637 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02637 443 Pfam NAF domain 298 355 IPR004041 GO:0007165
Csa04g02637 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Csa04g02637 443 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 432 - -
Csa04g02637 443 PANTHER - 1 432 - -
Csa04g02637 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02637 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165
Csa04g02637 443 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02637 443 CDD CIPK_C 302 416 - -
Csa04g02637 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Csa04g02637 443 CDD STKc_SnRK3 10 264 - -
Csa04g02637 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Csa04g02637 443 SUPERFAMILY Protein kinase-like (PK-like) 7 286 IPR011009 -
Csa04g02637 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02637 Csa-Chr4:25743103 Csa06g03710 Csa-Chr6:29666281 7.17E-164 dispersed
Csa06g01610 Csa-Chr6:13852353 Csa04g02637 Csa-Chr4:25743103 1.91E-149 dispersed
Csa03g00952 Csa-Chr3:7769942 Csa04g02637 Csa-Chr4:25743103 2.47E-56 transposed
Csa03g02975 Csa-Chr3:28361183 Csa04g02637 Csa-Chr4:25743103 1.06E-55 transposed
Csa05g01096 Csa-Chr5:11145568 Csa04g02637 Csa-Chr4:25743103 3.05E-85 transposed
Csa06g00625 Csa-Chr6:5241694 Csa04g02637 Csa-Chr4:25743103 4.21E-85 transposed
Csa06g01187 Csa-Chr6:10045067 Csa04g02637 Csa-Chr4:25743103 2.34E-40 transposed
Csa01g01874 Csa-Chr1:15751776 Csa04g02637 Csa-Chr4:25743103 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78199 PF00069 Pkinase 2.70E-74 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02637 - - csv:101213773 863.603