Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02646 ATGACGGTTGAGTCTAGACTCGATGACCCAGTTGACCAATTTCCCACTGGAATGCGTGTTCTTGCTGTTGACGATGATCCCACATGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACTAATCAGGCTGTTATGGCACTCAAGTTGCTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTCATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCGTGTGATTACTTGTTGAAGCCTGTTCGCATTGAGGAGCTGAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCCGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAATCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAATGAAGATGATGACCAGGACTATGGGCAAGATAATGATGACTCATCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTACATAGGAAGTTTGTAAATGCAGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACACGAGAAAATGTAGCTAGCCATCTACAGAAATACAGGCTTTATCTAAAGAGGATCAGCTGTGTGGCAAACCAGCAAGCTAATATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTGGCGGAATTGGGAATTTCCACTCTTTGACTGGACCTCCACAGTTTCCAAACACTTCTTATAGATCTATCCCAACCACAGGGATGTTCGGTCGATTGAATAGTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTGGGTAATTTGAGCAATTCTAGCAATGATCAGTCTACATTTCAGCCAATTGTGCTTTCTGGAAACCGCAGTGGGAATATTTTCCGTGGAATGCCTGAGCCATCAGAAATTGATCAACTCCAACATGTTAAGCATGGGACCCACGTGGACAATCTCTCTTCTGCTTTTGATGAACGAACAGTATTTCCTTCCATTGGCCTCCCAAATGGAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTCGATTCCAGAAGCCCAGCATCATGAAGTGAATGGTGGTAGAAAGTTTGGTACTCAATCTTCTATTTCGGTAGTATCTTCAAATTCAGATAGCCCACGTCCTTCATTAGATAATGTTAGATGCACTGGTGACAATTGGTCAAACGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCTGCCAACCTTTCTAATGTTGCTACTTCCTACCATGGGCAGTTGAGAGATAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGATATTTCTTCAATAACTTCATTATCTACTCAGTCCCATGAATCGAGAATAGATTCTCAACGTCAAGCAGCTACAACTAGCAACAGATTTGATCAATTGATCTCAAAGGTTCCTGTTCAGGATTGGAATGATCATAAAGAGGATGCATATTACCACACAACTATGGCCTGTAGCTCATCCAATTCTTTGATTCCAGTGAATGGTGCTGCAGAGACTTTGTCCAAGCGTTTGGAAAATCCTAACGCAATCTTCTCCGGTAGCAAGGATTTTAATGCGACTGGTCAAGCAAACGTTCTTGATCATGCAATGGTGGAACATGATCAATTCAAGAAATCAAACATGGAGACACCACTCATGTTGAAACAAGGTTATCTGTATGATCATCAGCAAAAGATGCAATCCAGATTTTCATCAAGCAACTGTGGCTCCTTGGAAGACATAGCGTGTGCAATGATGAAACAGGAACAAGATGATGGAAAGTTATTGGAAGGAGAGTTTGGATGTGATAATTATCCCATTGGAACATGCATGTGA 2067 42.14 MTVESRLDDPVDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEESADPNGKFNKKRKDQNYNEDDDQDYGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLGGIGNFHSLTGPPQFPNTSYRSIPTTGMFGRLNSPACMGMHGLSSPGTVQLGNLSNSSNDQSTFQPIVLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHVDNLSSAFDERTVFPSIGLPNGNMSSSTLSNPLLGLTNDPSIPEAQHHEVNGGRKFGTQSSISVVSSNSDSPRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSANLSNVATSYHGQLRDNTTSALHIGNCLSDISSITSLSTQSHESRIDSQRQAATTSNRFDQLISKVPVQDWNDHKEDAYYHTTMACSSSNSLIPVNGAAETLSKRLENPNAIFSGSKDFNATGQANVLDHAMVEHDQFKKSNMETPLMLKQGYLYDHQQKMQSRFSSSNCGSLEDIACAMMKQEQDDGKLLEGEFGCDNYPIGTCM* 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25830357 25836342 - CsaV3_4G036720.1 Csa04g02646 528256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02646 688 Gene3D - 198 256 - -
Csa04g02646 688 MobiDBLite consensus disorder prediction 433 456 - -
Csa04g02646 688 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Csa04g02646 688 MobiDBLite consensus disorder prediction 141 180 - -
Csa04g02646 688 MobiDBLite consensus disorder prediction 421 456 - -
Csa04g02646 688 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Csa04g02646 688 CDD REC_typeB_ARR-like 20 134 - -
Csa04g02646 688 SUPERFAMILY CheY-like 16 142 IPR011006 -
Csa04g02646 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 663 - -
Csa04g02646 688 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Csa04g02646 688 Gene3D - 18 197 - -
Csa04g02646 688 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Csa04g02646 688 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Csa04g02646 688 MobiDBLite consensus disorder prediction 141 196 - -
Csa04g02646 688 PIRSF RR_ARR_type-B 1 688 IPR017053 GO:0003677|GO:0003700|GO:0009736
Csa04g02646 688 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Csa04g02646 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 663 IPR045279 GO:0009736
Csa04g02646 688 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02144 Csa-Chr1:18623463 Csa04g02646 Csa-Chr4:25830357 1.54E-66 dispersed
Csa02g00244 Csa-Chr2:1638210 Csa04g02646 Csa-Chr4:25830357 5.13E-139 dispersed
Csa03g01497 Csa-Chr3:11108956 Csa04g02646 Csa-Chr4:25830357 3.62E-109 dispersed
Csa04g02646 Csa-Chr4:25830357 Csa06g01765 Csa-Chr6:15531730 2.05E-110 dispersed
Csa01g01861 Csa-Chr1:15634051 Csa04g02646 Csa-Chr4:25830357 8.62E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31642 PF00072 Response_reg 3.20E-23 CL0304 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02646 - K14491 csv:101215220 1364.36