Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02646 | ATGACGGTTGAGTCTAGACTCGATGACCCAGTTGACCAATTTCCCACTGGAATGCGTGTTCTTGCTGTTGACGATGATCCCACATGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACTAATCAGGCTGTTATGGCACTCAAGTTGCTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTCATTATGCTCTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTACTCATGGAGCGTGTGATTACTTGTTGAAGCCTGTTCGCATTGAGGAGCTGAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCCGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAATCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAATGAAGATGATGACCAGGACTATGGGCAAGATAATGATGACTCATCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTACATAGGAAGTTTGTAAATGCAGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACACGAGAAAATGTAGCTAGCCATCTACAGAAATACAGGCTTTATCTAAAGAGGATCAGCTGTGTGGCAAACCAGCAAGCTAATATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTGGCGGAATTGGGAATTTCCACTCTTTGACTGGACCTCCACAGTTTCCAAACACTTCTTATAGATCTATCCCAACCACAGGGATGTTCGGTCGATTGAATAGTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTGGGTAATTTGAGCAATTCTAGCAATGATCAGTCTACATTTCAGCCAATTGTGCTTTCTGGAAACCGCAGTGGGAATATTTTCCGTGGAATGCCTGAGCCATCAGAAATTGATCAACTCCAACATGTTAAGCATGGGACCCACGTGGACAATCTCTCTTCTGCTTTTGATGAACGAACAGTATTTCCTTCCATTGGCCTCCCAAATGGAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTCGATTCCAGAAGCCCAGCATCATGAAGTGAATGGTGGTAGAAAGTTTGGTACTCAATCTTCTATTTCGGTAGTATCTTCAAATTCAGATAGCCCACGTCCTTCATTAGATAATGTTAGATGCACTGGTGACAATTGGTCAAACGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCTGCCAACCTTTCTAATGTTGCTACTTCCTACCATGGGCAGTTGAGAGATAATACTACCAGTGCATTGCATATAGGAAATTGTCTTTCTGATATTTCTTCAATAACTTCATTATCTACTCAGTCCCATGAATCGAGAATAGATTCTCAACGTCAAGCAGCTACAACTAGCAACAGATTTGATCAATTGATCTCAAAGGTTCCTGTTCAGGATTGGAATGATCATAAAGAGGATGCATATTACCACACAACTATGGCCTGTAGCTCATCCAATTCTTTGATTCCAGTGAATGGTGCTGCAGAGACTTTGTCCAAGCGTTTGGAAAATCCTAACGCAATCTTCTCCGGTAGCAAGGATTTTAATGCGACTGGTCAAGCAAACGTTCTTGATCATGCAATGGTGGAACATGATCAATTCAAGAAATCAAACATGGAGACACCACTCATGTTGAAACAAGGTTATCTGTATGATCATCAGCAAAAGATGCAATCCAGATTTTCATCAAGCAACTGTGGCTCCTTGGAAGACATAGCGTGTGCAATGATGAAACAGGAACAAGATGATGGAAAGTTATTGGAAGGAGAGTTTGGATGTGATAATTATCCCATTGGAACATGCATGTGA | 2067 | 42.14 | MTVESRLDDPVDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEESADPNGKFNKKRKDQNYNEDDDQDYGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLGGIGNFHSLTGPPQFPNTSYRSIPTTGMFGRLNSPACMGMHGLSSPGTVQLGNLSNSSNDQSTFQPIVLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHVDNLSSAFDERTVFPSIGLPNGNMSSSTLSNPLLGLTNDPSIPEAQHHEVNGGRKFGTQSSISVVSSNSDSPRPSLDNVRCTGDNWSNAVHSSRVHLNTIPSANLSNVATSYHGQLRDNTTSALHIGNCLSDISSITSLSTQSHESRIDSQRQAATTSNRFDQLISKVPVQDWNDHKEDAYYHTTMACSSSNSLIPVNGAAETLSKRLENPNAIFSGSKDFNATGQANVLDHAMVEHDQFKKSNMETPLMLKQGYLYDHQQKMQSRFSSSNCGSLEDIACAMMKQEQDDGKLLEGEFGCDNYPIGTCM* | 689 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25830357 | 25836342 | - | CsaV3_4G036720.1 | Csa04g02646 | 528256 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02646 | 688 | Gene3D | - | 198 | 256 | - | - | |
Csa04g02646 | 688 | MobiDBLite | consensus disorder prediction | 433 | 456 | - | - | |
Csa04g02646 | 688 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 194 | 253 | IPR017930 | - | |
Csa04g02646 | 688 | MobiDBLite | consensus disorder prediction | 141 | 180 | - | - | |
Csa04g02646 | 688 | MobiDBLite | consensus disorder prediction | 421 | 456 | - | - | |
Csa04g02646 | 688 | Pfam | Myb-like DNA-binding domain | 199 | 249 | IPR001005 | - | |
Csa04g02646 | 688 | CDD | REC_typeB_ARR-like | 20 | 134 | - | - | |
Csa04g02646 | 688 | SUPERFAMILY | CheY-like | 16 | 142 | IPR011006 | - | |
Csa04g02646 | 688 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR10 | 1 | 663 | - | - | |
Csa04g02646 | 688 | SUPERFAMILY | Homeodomain-like | 194 | 254 | IPR009057 | - | |
Csa04g02646 | 688 | Gene3D | - | 18 | 197 | - | - | |
Csa04g02646 | 688 | ProSiteProfiles | Response regulatory domain profile. | 19 | 134 | IPR001789 | GO:0000160 | |
Csa04g02646 | 688 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 197 | 250 | IPR006447 | GO:0003677 | |
Csa04g02646 | 688 | MobiDBLite | consensus disorder prediction | 141 | 196 | - | - | |
Csa04g02646 | 688 | PIRSF | RR_ARR_type-B | 1 | 688 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Csa04g02646 | 688 | Pfam | Response regulator receiver domain | 20 | 128 | IPR001789 | GO:0000160 | |
Csa04g02646 | 688 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 663 | IPR045279 | GO:0009736 | |
Csa04g02646 | 688 | SMART | REC_2 | 18 | 130 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02144 | Csa-Chr1:18623463 | Csa04g02646 | Csa-Chr4:25830357 | 1.54E-66 | dispersed | |
Csa02g00244 | Csa-Chr2:1638210 | Csa04g02646 | Csa-Chr4:25830357 | 5.13E-139 | dispersed | |
Csa03g01497 | Csa-Chr3:11108956 | Csa04g02646 | Csa-Chr4:25830357 | 3.62E-109 | dispersed | |
Csa04g02646 | Csa-Chr4:25830357 | Csa06g01765 | Csa-Chr6:15531730 | 2.05E-110 | dispersed | |
Csa01g01861 | Csa-Chr1:15634051 | Csa04g02646 | Csa-Chr4:25830357 | 8.62E-171 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31642 | PF00072 | Response_reg | 3.20E-23 | CL0304 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02646 | - | K14491 | csv:101215220 | 1364.36 |