Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02652 ATGGCTCCGCGATTGCCGTTTTTGTCAGCAATTACCAAATATAAATCACCCATTGTATGCTATGTTTTTCTCTCACGCATTTTCACAAACACCTTCTGGGAGGAGGAAATACAACCGAGTTATGCCATGGCCAGGCCTCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGTTCTTGGGTTTCCGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGGACATTTGAAACAGCGGAGGATGCAGCGAGAGCTTATGATGAAGCTGCAAGGTTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAGTCCAAGTGCAATTCAGTCATCAAATTCCAGGATTTTATCGTCTAATTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGGAGATTAGTAACCAAGGTTCAGCGGAGTTTAAAAGCGACATTACCGCGGCGTTTCCGGCGCCGGCGTCGACGAGTTCGGTGGTGGAGGAGATTATACCGGCGGTGGAAGAAGTGCCGTGTGCGGCGGATTGGATGGTGCGAAGTGTGAAAATAGAGAGTGAATTTGGGGAACTGAAATTGTTGGAAGATGATCATATTGAGCAAATGATTGAGGAGCTTCGTTACTATGGATCCATGGAGTTTTGTTTGTGA 660 45.15 MAPRLPFLSAITKYKSPIVCYVFLSRIFTNTFWEEEIQPSYAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYSPSAIQSSNSRILSSNLTAKLHRCYMASLEISNQGSAEFKSDITAAFPAPASTSSVVEEIIPAVEEVPCAADWMVRSVKIESEFGELKLLEDDHIEQMIEELRYYGSMEFCL* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25867321 25868468 - CsaV3_4G036780.1 Csa04g02652 528262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02652 219 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Csa04g02652 219 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Csa04g02652 219 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Csa04g02652 219 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Csa04g02652 219 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Csa04g02652 219 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Csa04g02652 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 43 218 - -
Csa04g02652 219 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Csa04g02652 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE ISOFORM X1 43 218 - -
Csa04g02652 219 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00191 Csa-Chr2:1316777 Csa04g02652 Csa-Chr4:25867321 2.41E-33 dispersed
Csa02g02418 Csa-Chr2:21330430 Csa04g02652 Csa-Chr4:25867321 3.85E-68 dispersed
Csa04g00152 Csa-Chr4:856671 Csa04g02652 Csa-Chr4:25867321 1.61E-36 dispersed
Csa04g02652 Csa-Chr4:25867321 Csa06g02395 Csa-Chr6:21412666 2.36E-25 dispersed
Csa04g00174 Csa-Chr4:1000954 Csa04g02652 Csa-Chr4:25867321 9.66E-48 transposed
Csa02g02417 Csa-Chr2:21323734 Csa04g02652 Csa-Chr4:25867321 5.09E-69 wgd
Csa04g02652 Csa-Chr4:25867321 Csa07g02109 Csa-Chr7:20295175 1.44E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31644 PF00847 AP2 9.10E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02652 - - csv:101216179 422.55