Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02655 ATGGAAGCTCGGACGAGAATAGGAGTACTGGCTGTGGCTGGATTTTGTTCTGCCGTGCTTATCGCTGCTTTGTTTTCATTGCTCTGGTTGTGGATTCACCGGCAGAGGAGAAATGCTGGTAAAAGCAAACGGAAAGATGCCGAGAAAGGGATTGGATTAGCTCCATTTGTGACTGGGAAGAAGGGATGTGTATCAGTGATTGATTTCAAAGTATTGGAGAAAGCTACTGGGAATTTTGGGGAGAGTAATGTATTGGGCGAAGGTGGATTTGGGAGAGTTTACAAGGCTTTGTTGGATGATAATTTGGTTGTGGCTGTGAAGAAGCTTGATTGCAGTGGCTTTCAAGCTGACACAGAATTTGAGAATGAAGTGAATATATTGAGCGGAATTCATCATCCGAATATTATTTGCCAATTGGGATGTAGCAGTGAGGGAGATTCAAAGTTGATTGTTTATGAGCTCATGGAGAATGGATCTCTAGAAACTCAACTCCATGGGCCCTCTCGTGGTTCTGCCTTAAATTGGCACATGCGTATGAAGATTGCTCTCGATGTTGCAAGAGGATTAGAATACCTTCACGAGCATTGCCACCCTGCAGTTATTCATAGAGATTTGAAGACTTCCAACATCCTTCTTGATGCCAACTTCAACGCTAAGTTGGCTGACTTTGGGATTGCAATCACTGATGGAACCCAAAACAATAACAAAATTAAGCTTTCTGGGACCTTGGGATATGTAGCTCCAGAGTATCTATTACATGGAAAATTAACAGAGAAAAGTGATGTGTATGCTTATGGAATTGTGGTACTAGAGCTTCTGCTAGGAAGAAGGCCGGTGGAGAAACGGCCAACACCACAATCCCACTCTATCGTCACGTGGGCAATGCCTCAACTGACAGATAGATCGAAGTTGCCAAACATAGTAGATCCTGTTATTAGAAATACTATGGATCTCAAACACTTGTATCAGGTTGCTGCAATGGCTGTATTGTGTGTACAAGGAGAAGCAAGCTACAGACCTTTAATAAAAGATGTTCTACACTCTCTAATTGCCCTTGTTCCCATAGAGCTTGGAGGTACCCTAAGATTAAACCCACCACCACAATGA 1107 42.91 MEARTRIGVLAVAGFCSAVLIAALFSLLWLWIHRQRRNAGKSKRKDAEKGIGLAPFVTGKKGCVSVIDFKVLEKATGNFGESNVLGEGGFGRVYKALLDDNLVVAVKKLDCSGFQADTEFENEVNILSGIHHPNIICQLGCSSEGDSKLIVYELMENGSLETQLHGPSRGSALNWHMRMKIALDVARGLEYLHEHCHPAVIHRDLKTSNILLDANFNAKLADFGIAITDGTQNNNKIKLSGTLGYVAPEYLLHGKLTEKSDVYAYGIVVLELLLGRRPVEKRPTPQSHSIVTWAMPQLTDRSKLPNIVDPVIRNTMDLKHLYQVAAMAVLCVQGEASYRPLIKDVLHSLIALVPIELGGTLRLNPPPQ* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25873961 25879696 - CsaV3_4G036810.1 Csa04g02655 528265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02655 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Csa04g02655 368 Gene3D Transferase(Phosphotransferase) domain 1 155 355 - -
Csa04g02655 368 PANTHER BNAA04G14780D PROTEIN 13 364 - -
Csa04g02655 368 SUPERFAMILY Protein kinase-like (PK-like) 64 349 IPR011009 -
Csa04g02655 368 ProSiteProfiles Protein kinase domain profile. 79 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02655 368 Pfam Protein kinase domain 82 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02655 368 PANTHER OS01G0750732 PROTEIN 13 364 - -
Csa04g02655 368 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Csa04g02655 368 SMART serkin_6 79 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02655 368 Gene3D Phosphorylase Kinase; domain 1 41 154 - -
Csa04g02655 368 CDD STKc_IRAK 85 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02655 Csa-Chr4:25873961 Csa01g02799 Csa-Chr1:24642337 6.09E-89 dispersed
Csa02g02414 Csa-Chr2:21306138 Csa04g02655 Csa-Chr4:25873961 2.84E-173 wgd
Csa04g02655 Csa-Chr4:25873961 Csa07g02110 Csa-Chr7:20302074 3.20E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78200 PF00069 Pkinase 2.70E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02655 - - csv:101214742 739.184