Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02662 | ATGGCGTATCACAATCACCTCTCTCAAGACCTTCCTCTTCACTTCTCTGACCATCACCACCAAAATCAACCTCTGTCTGATTCTTCTTCTCTCCGTAACATTTTGCCGGACCAACTTCCCGCCGGCCACACCTCGCCGGACCCCAAGTCTCAACAACCCCATCATCACCACCATCATCAACACCCTCTTCAGACTGCCCCCAATTGGCTCAACAACGCACTCCTGCGTAACCAAAACCCCCATTCTCACTTCTCTACCGACACCGCCACCACCGCCGCTGCTGCTAATACTAATTTCCTCAACCTTCATACAACTGCATCTGATTCTACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGTCCGATTCTTCACCGAAACCATAGCGATGTTATAGATGATGTCGCCGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTGTCTCATGATTCTGGTGACTTGAAGAACGATGCTAATAGTGGTGATGGATTGAATAAAAGTGAAGGTATGGTGATGGAACCTGGTGCGGGTGGAGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTATGAGCAGCTTCTCTCCGCTCATGTTGCTTGTCTTCGTATCGCGACCCCGGTCGATCAATTACCGAGGATCGACGCTCAGCTCGCTCAGTCTCAGAATGTCGTCGCCAAGTACTCCGCCTTGGGTCACTCGGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTCGATCAATTCATGACACATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGAGTCCATGCTATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGTTTAACAGGAGTTTCACCTGGCGAAGGTACAGGAGCAACAATGTCCGACGACGACGACGACCAGGTTGACAGTGATGCAAATGTGTTTGATGGAAGTTTAGACGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTAATGGAGAGGGTCAGGCAAGAACTGAAGCACGAATTAAAATCGGGTTACAAGGAGAAAATTGTTGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACGGAGGAAGACAAGGCAAGATTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA | 1401 | 47.61 | MAYHNHLSQDLPLHFSDHHHQNQPLSDSSSLRNILPDQLPAGHTSPDPKSQQPHHHHHHQHPLQTAPNWLNNALLRNQNPHSHFSTDTATTAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANVFDGSLDGPDTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSNAGENSSDRFK* | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25925517 | 25930093 | + | CsaV3_4G036880.1 | Csa04g02662 | 528272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02662 | 466 | Pfam | KNOX2 domain | 250 | 300 | IPR005541 | GO:0003677|GO:0005634 | |
Csa04g02662 | 466 | Pfam | KNOX1 domain | 191 | 232 | IPR005540 | GO:0003677|GO:0005634 | |
Csa04g02662 | 466 | Gene3D | - | 379 | 440 | - | - | |
Csa04g02662 | 466 | CDD | homeodomain | 381 | 442 | IPR001356 | GO:0003677 | |
Csa04g02662 | 466 | MobiDBLite | consensus disorder prediction | 14 | 63 | - | - | |
Csa04g02662 | 466 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 54 | 455 | - | - | |
Csa04g02662 | 466 | SMART | KNOX1_2 | 189 | 233 | IPR005540 | GO:0003677|GO:0005634 | |
Csa04g02662 | 466 | SMART | HOX_1 | 380 | 445 | IPR001356 | GO:0003677 | |
Csa04g02662 | 466 | ProSiteProfiles | ELK domain profile. | 358 | 378 | IPR005539 | GO:0003677 | |
Csa04g02662 | 466 | Pfam | Homeobox KN domain | 398 | 437 | IPR008422 | GO:0003677|GO:0006355 | |
Csa04g02662 | 466 | SUPERFAMILY | Homeodomain-like | 380 | 444 | IPR009057 | - | |
Csa04g02662 | 466 | MobiDBLite | consensus disorder prediction | 300 | 319 | - | - | |
Csa04g02662 | 466 | SMART | KNOX2_2 | 246 | 301 | IPR005541 | GO:0003677|GO:0005634 | |
Csa04g02662 | 466 | MobiDBLite | consensus disorder prediction | 435 | 455 | - | - | |
Csa04g02662 | 466 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 54 | 455 | - | - | |
Csa04g02662 | 466 | ProSiteProfiles | 'Homeobox' domain profile. | 378 | 441 | IPR001356 | GO:0003677 | |
Csa04g02662 | 466 | MobiDBLite | consensus disorder prediction | 435 | 466 | - | - | |
Csa04g02662 | 466 | Pfam | ELK domain | 358 | 379 | IPR005539 | GO:0003677 | |
Csa04g02662 | 466 | SMART | ELK_2 | 358 | 379 | IPR005539 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02662 | Csa-Chr4:25925517 | Csa07g00330 | Csa-Chr7:2465899 | 8.39E-31 | dispersed | |
Csa05g00334 | Csa-Chr5:2116274 | Csa04g02662 | Csa-Chr4:25925517 | 2.23E-131 | transposed | |
Csa02g02412 | Csa-Chr2:21279435 | Csa04g02662 | Csa-Chr4:25925517 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31645 | PF03791 | KNOX2 | 1.90E-21 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02662 | - | - | csv:101217292 | 886.33 |