Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02662 ATGGCGTATCACAATCACCTCTCTCAAGACCTTCCTCTTCACTTCTCTGACCATCACCACCAAAATCAACCTCTGTCTGATTCTTCTTCTCTCCGTAACATTTTGCCGGACCAACTTCCCGCCGGCCACACCTCGCCGGACCCCAAGTCTCAACAACCCCATCATCACCACCATCATCAACACCCTCTTCAGACTGCCCCCAATTGGCTCAACAACGCACTCCTGCGTAACCAAAACCCCCATTCTCACTTCTCTACCGACACCGCCACCACCGCCGCTGCTGCTAATACTAATTTCCTCAACCTTCATACAACTGCATCTGATTCTACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGTCCGATTCTTCACCGAAACCATAGCGATGTTATAGATGATGTCGCCGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTGTCTCATGATTCTGGTGACTTGAAGAACGATGCTAATAGTGGTGATGGATTGAATAAAAGTGAAGGTATGGTGATGGAACCTGGTGCGGGTGGAGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTATGAGCAGCTTCTCTCCGCTCATGTTGCTTGTCTTCGTATCGCGACCCCGGTCGATCAATTACCGAGGATCGACGCTCAGCTCGCTCAGTCTCAGAATGTCGTCGCCAAGTACTCCGCCTTGGGTCACTCGGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTCGATCAATTCATGACACATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGAGTCCATGCTATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGTTTAACAGGAGTTTCACCTGGCGAAGGTACAGGAGCAACAATGTCCGACGACGACGACGACCAGGTTGACAGTGATGCAAATGTGTTTGATGGAAGTTTAGACGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTAATGGAGAGGGTCAGGCAAGAACTGAAGCACGAATTAAAATCGGGTTACAAGGAGAAAATTGTTGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACGGAGGAAGACAAGGCAAGATTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1401 47.61 MAYHNHLSQDLPLHFSDHHHQNQPLSDSSSLRNILPDQLPAGHTSPDPKSQQPHHHHHHQHPLQTAPNWLNNALLRNQNPHSHFSTDTATTAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANVFDGSLDGPDTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSNAGENSSDRFK* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25925517 25930093 + CsaV3_4G036880.1 Csa04g02662 528272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02662 466 Pfam KNOX2 domain 250 300 IPR005541 GO:0003677|GO:0005634
Csa04g02662 466 Pfam KNOX1 domain 191 232 IPR005540 GO:0003677|GO:0005634
Csa04g02662 466 Gene3D - 379 440 - -
Csa04g02662 466 CDD homeodomain 381 442 IPR001356 GO:0003677
Csa04g02662 466 MobiDBLite consensus disorder prediction 14 63 - -
Csa04g02662 466 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 54 455 - -
Csa04g02662 466 SMART KNOX1_2 189 233 IPR005540 GO:0003677|GO:0005634
Csa04g02662 466 SMART HOX_1 380 445 IPR001356 GO:0003677
Csa04g02662 466 ProSiteProfiles ELK domain profile. 358 378 IPR005539 GO:0003677
Csa04g02662 466 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Csa04g02662 466 SUPERFAMILY Homeodomain-like 380 444 IPR009057 -
Csa04g02662 466 MobiDBLite consensus disorder prediction 300 319 - -
Csa04g02662 466 SMART KNOX2_2 246 301 IPR005541 GO:0003677|GO:0005634
Csa04g02662 466 MobiDBLite consensus disorder prediction 435 455 - -
Csa04g02662 466 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 455 - -
Csa04g02662 466 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Csa04g02662 466 MobiDBLite consensus disorder prediction 435 466 - -
Csa04g02662 466 Pfam ELK domain 358 379 IPR005539 GO:0003677
Csa04g02662 466 SMART ELK_2 358 379 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02662 Csa-Chr4:25925517 Csa07g00330 Csa-Chr7:2465899 8.39E-31 dispersed
Csa05g00334 Csa-Chr5:2116274 Csa04g02662 Csa-Chr4:25925517 2.23E-131 transposed
Csa02g02412 Csa-Chr2:21279435 Csa04g02662 Csa-Chr4:25925517 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31645 PF03791 KNOX2 1.90E-21 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02662 - - csv:101217292 886.33