Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02662 ATGGCGTATCACAATCACCTCTCTCAAGACCTTCCTCTTCACTTCTCTGACCATCACCACCAAAATCAACCTCTGTCTGATTCTTCTTCTCTCCGTAACATTTTGCCGGACCAACTTCCCGCCGGCCACACCTCGCCGGACCCCAAGTCTCAACAACCCCATCATCACCACCATCATCAACACCCTCTTCAGACTGCCCCCAATTGGCTCAACAACGCACTCCTGCGTAACCAAAACCCCCATTCTCACTTCTCTACCGACACCGCCACCACCGCCGCTGCTGCTAATACTAATTTCCTCAACCTTCATACAACTGCATCTGATTCTACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGTCCGATTCTTCACCGAAACCATAGCGATGTTATAGATGATGTCGCCGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTGTCTCATGATTCTGGTGACTTGAAGAACGATGCTAATAGTGGTGATGGATTGAATAAAAGTGAAGGTATGGTGATGGAACCTGGTGCGGGTGGAGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTATGAGCAGCTTCTCTCCGCTCATGTTGCTTGTCTTCGTATCGCGACCCCGGTCGATCAATTACCGAGGATCGACGCTCAGCTCGCTCAGTCTCAGAATGTCGTCGCCAAGTACTCCGCCTTGGGTCACTCGGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTCGATCAATTCATGACACATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGAGTCCATGCTATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGTTTAACAGGAGTTTCACCTGGCGAAGGTACAGGAGCAACAATGTCCGACGACGACGACGACCAGGTTGACAGTGATGCAAATGTGTTTGATGGAAGTTTAGACGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTAATGGAGAGGGTCAGGCAAGAACTGAAGCACGAATTAAAATCGGGTTACAAGGAGAAAATTGTTGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACGGAGGAAGACAAGGCAAGATTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1401 47.61 MAYHNHLSQDLPLHFSDHHHQNQPLSDSSSLRNILPDQLPAGHTSPDPKSQQPHHHHHHQHPLQTAPNWLNNALLRNQNPHSHFSTDTATTAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANVFDGSLDGPDTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSNAGENSSDRFK* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25925517 25930093 + CsaV3_4G036880.1 Csa04g02662 528272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02662 466 Pfam KNOX2 domain 250 300 IPR005541 GO:0003677|GO:0005634
Csa04g02662 466 Pfam KNOX1 domain 191 232 IPR005540 GO:0003677|GO:0005634
Csa04g02662 466 Gene3D - 379 440 - -
Csa04g02662 466 CDD homeodomain 381 442 IPR001356 GO:0003677
Csa04g02662 466 MobiDBLite consensus disorder prediction 14 63 - -
Csa04g02662 466 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 54 455 - -
Csa04g02662 466 SMART KNOX1_2 189 233 IPR005540 GO:0003677|GO:0005634
Csa04g02662 466 SMART HOX_1 380 445 IPR001356 GO:0003677
Csa04g02662 466 ProSiteProfiles ELK domain profile. 358 378 IPR005539 GO:0003677
Csa04g02662 466 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Csa04g02662 466 SUPERFAMILY Homeodomain-like 380 444 IPR009057 -
Csa04g02662 466 MobiDBLite consensus disorder prediction 300 319 - -
Csa04g02662 466 SMART KNOX2_2 246 301 IPR005541 GO:0003677|GO:0005634
Csa04g02662 466 MobiDBLite consensus disorder prediction 435 455 - -
Csa04g02662 466 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 455 - -
Csa04g02662 466 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Csa04g02662 466 MobiDBLite consensus disorder prediction 435 466 - -
Csa04g02662 466 Pfam ELK domain 358 379 IPR005539 GO:0003677
Csa04g02662 466 SMART ELK_2 358 379 IPR005539 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02662 - - - csv:101217292 886.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02662 Csa-Chr4:25925517 Csa07g00330 Csa-Chr7:2465899 8.39E-31 dispersed
Csa05g00334 Csa-Chr5:2116274 Csa04g02662 Csa-Chr4:25925517 2.23E-131 transposed
Csa02g02412 Csa-Chr2:21279435 Csa04g02662 Csa-Chr4:25925517 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g00579 . 59 584 Homeobox Transcription Factor Family AT4G00730 65.2 1.1e-177 620.2
Csa03g01692 . 11 497 Homeobox Transcription Factor Family AT4G00730 55.9 2.5e-139 492.7
Csa03g03923 CCT 1 286 Homeobox Transcription Factor Family AT3G01470 52.6 4.0e-58 221.9
Csa05g02906 CCT 1 276 Homeobox Transcription Factor Family AT3G01470 51.2 9.9e-49 190.7
Csa03g02389 . 115 759 Homeobox Transcription Factor Family AT1G79840 61.0 2.5e-213 738.8
Csa05g02432 . 4 299 Homeobox Transcription Factor Family AT1G69780 65.6 2.5e-82 302.4
Csa01g02627 . 4 845 Homeobox Transcription Factor Family AT2G34710 79.7 0.0e+00 1332.0
Csa06g03845 . 1 727 Homeobox Transcription Factor Family AT2G34710 75.9 0.0e+00 1145.6
Csa06g01195 CCT,ECH 23 842 Homeobox Transcription Factor Family AT2G34710 69.1 0.0e+00 1133.2
Csa07g02448 . 3 838 Homeobox Transcription Factor Family AT2G34710 66.2 0.0e+00 1099.0
Csa03g04545 . 1 843 Homeobox Transcription Factor Family AT2G34710 64.9 7.6e-314 1073.2
Csa01g01393 CCT,ECH 3 182 Homeobox Transcription Factor Family AT2G34710 62.1 8.4e-54 209.1
Csa07g02448 . 1 789 Homeobox Transcription Factor Family AT1G52150 85.6 0.0e+00 1354.0
Csa03g04545 . 7 794 Homeobox Transcription Factor Family AT1G52150 77.8 0.0e+00 1224.9
Csa01g02627 . 14 796 Homeobox Transcription Factor Family AT1G52150 66.8 2.7e-296 1014.6
Csa06g01195 CCT,ECH 23 792 Homeobox Transcription Factor Family AT1G52150 67.4 2.8e-293 1004.6
Csa06g03845 . 1 683 Homeobox Transcription Factor Family AT1G52150 62.2 6.9e-244 840.5
Csa01g01393 CCT,ECH 3 178 Homeobox Transcription Factor Family AT1G52150 64.8 2.7e-54 210.7
Csa03g00254 . 33 276 Homeobox Transcription Factor Family AT4G16780 68.2 1.8e-77 286.2
Csa03g00756 CCT 6 288 Homeobox Transcription Factor Family AT4G16780 53.4 1.2e-65 246.9
Csa06g03058 . 71 228 Homeobox Transcription Factor Family AT4G16780 66.7 2.1e-49 193.0
Csa07g02054 . 157 280 Homeobox Transcription Factor Family AT4G16780 76.0 9.7e-47 184.1
Csa03g03564 . 235 349 Homeobox Transcription Factor Family AT4G16780 81.9 6.3e-46 181.4
Csa03g02434 . 139 264 Homeobox Transcription Factor Family AT4G16780 70.9 1.1e-42 170.6
Csa01g02201 . 136 255 Homeobox Transcription Factor Family AT4G16780 69.2 1.0e-40 164.1
Csa04g02512 . 99 256 Homeobox Transcription Factor Family AT4G16780 57.6 2.3e-40 162.9
Csa03g00254 . 3 224 Homeobox Transcription Factor Family AT2G44910 62.6 8.0e-66 247.7
Csa03g00756 CCT 32 258 Homeobox Transcription Factor Family AT2G44910 63.8 3.1e-62 235.7
Csa06g03058 . 71 235 Homeobox Transcription Factor Family AT2G44910 62.5 6.8e-49 191.4
Csa07g02054 . 110 289 Homeobox Transcription Factor Family AT2G44910 62.6 2.0e-48 189.9
Csa03g03564 . 235 354 Homeobox Transcription Factor Family AT2G44910 79.3 1.4e-46 183.7
Csa03g02434 . 148 266 Homeobox Transcription Factor Family AT2G44910 70.0 6.8e-41 164.9
Csa01g02201 . 136 256 Homeobox Transcription Factor Family AT2G44910 66.9 5.7e-40 161.8
Csa04g02512 . 93 256 Homeobox Transcription Factor Family AT2G44910 53.9 9.8e-40 161.0
Csa03g02942 . 136 248 Homeobox Transcription Factor Family AT2G44910 67.5 1.2e-37 154.1
Csa03g04545 . 18 843 Homeobox Transcription Factor Family AT4G32880 79.5 0.0e+00 1338.6
Csa07g02448 . 9 838 Homeobox Transcription Factor Family AT4G32880 78.9 0.0e+00 1322.8
Csa01g02627 . 14 845 Homeobox Transcription Factor Family AT4G32880 65.3 7.4e-313 1069.7
Csa06g01195 CCT,ECH 14 842 Homeobox Transcription Factor Family AT4G32880 65.6 2.7e-307 1051.2
Csa06g03845 . 1 727 Homeobox Transcription Factor Family AT4G32880 60.5 3.0e-258 888.3
Csa01g01393 CCT,ECH 3 178 Homeobox Transcription Factor Family AT4G32880 65.4 2.2e-54 211.1
Csa01g02627 . 7 845 Homeobox Transcription Factor Family AT1G30490 77.8 0.0e+00 1278.8
Csa06g03845 . 1 727 Homeobox Transcription Factor Family AT1G30490 75.3 0.0e+00 1122.8
Csa06g01195 CCT,ECH 5 842 Homeobox Transcription Factor Family AT1G30490 65.7 0.0e+00 1085.9
Csa07g02448 . 2 838 Homeobox Transcription Factor Family AT1G30490 63.5 1.1e-305 1045.8
Csa03g04545 . 2 843 Homeobox Transcription Factor Family AT1G30490 62.2 1.8e-295 1011.9
Csa01g01393 CCT,ECH 3 178 Homeobox Transcription Factor Family AT1G30490 61.3 1.6e-52 204.9
Csa02g02688 . 38 758 Homeobox Transcription Factor Family AT4G21750 70.8 1.3e-295 1012.3
Csa07g00370 . 84 760 Homeobox Transcription Factor Family AT4G21750 74.6 2.4e-294 1008.1
Csa06g03532 CCT 1 716 Homeobox Transcription Factor Family AT4G21750 66.5 3.6e-274 941.0
Csa01g01099 CCT 7 737 Homeobox Transcription Factor Family AT4G21750 67.2 5.2e-273 937.2
Csa06g00579 . 93 840 Homeobox Transcription Factor Family AT4G21750 54.6 5.9e-216 747.7
Csa02g01490 . 246 505 Homeobox Transcription Factor Family AT5G41410 57.5 2.1e-67 253.8
Csa06g02874 . 301 553 Homeobox Transcription Factor Family AT5G41410 51.3 2.1e-67 253.8
Csa03g03494 . 256 456 Homeobox Transcription Factor Family AT5G41410 56.0 3.0e-61 233.4
Csa06g02470 . 258 467 Homeobox Transcription Factor Family AT5G41410 53.3 8.1e-59 225.3
Csa02g01292 CCT,ECH 283 482 Homeobox Transcription Factor Family AT5G41410 54.9 1.1e-58 224.9
Csa07g02163 . 228 426 Homeobox Transcription Factor Family AT5G41410 51.2 1.1e-50 198.4
Csa01g01369 . 439 640 Homeobox Transcription Factor Family AT5G41410 52.5 9.0e-50 195.3
Csa04g01545 CCT,ECH 170 339 Homeobox Transcription Factor Family AT5G41410 50.3 3.7e-43 173.3
Csa02g01490 . 89 483 Homeobox Transcription Factor Family AT4G36870 54.6 7.5e-104 374.8
Csa05g00256 . 149 363 Homeobox Transcription Factor Family AT4G36870 56.8 8.9e-65 245.0
Csa01g01369 . 433 610 Homeobox Transcription Factor Family AT4G36870 56.7 4.9e-47 186.0
Csa01g01369 . 433 609 Homeobox Transcription Factor Family AT1G75410 50.8 2.3e-41 166.8
Csa06g02874 . 292 696 Homeobox Transcription Factor Family AT2G23760 52.9 4.4e-106 382.5
Csa02g01490 . 238 653 Homeobox Transcription Factor Family AT2G23760 59.1 1.7e-105 380.6
Csa03g03494 . 189 457 Homeobox Transcription Factor Family AT1G19700 52.5 1.3e-65 247.7
Csa06g02470 . 190 468 Homeobox Transcription Factor Family AT1G19700 52.5 2.5e-64 243.4
Csa05g00256 . 192 391 Homeobox Transcription Factor Family AT1G19700 57.7 4.6e-58 222.6
Csa01g01369 . 439 632 Homeobox Transcription Factor Family AT1G19700 53.6 3.2e-51 199.9
Csa04g01545 CCT,ECH 112 341 Homeobox Transcription Factor Family AT5G02030 57.8 7.4e-70 261.9
Csa03g00254 . 7 276 Homeobox Transcription Factor Family AT4G17460 54.0 2.4e-66 249.2
Csa03g00756 CCT 6 256 Homeobox Transcription Factor Family AT4G17460 57.5 1.1e-61 233.8
Csa07g02054 . 150 286 Homeobox Transcription Factor Family AT4G17460 71.1 3.4e-44 175.6
Csa06g03058 . 1 230 Homeobox Transcription Factor Family AT4G17460 50.8 9.9e-44 174.1
Csa03g03564 . 235 349 Homeobox Transcription Factor Family AT4G17460 79.3 4.2e-42 168.7
Csa03g02434 . 129 264 Homeobox Transcription Factor Family AT4G17460 63.3 1.3e-38 157.1
Csa03g00254 . 1 276 Homeobox Transcription Factor Family AT5G47370 56.3 1.2e-68 256.9
Csa03g00756 CCT 6 255 Homeobox Transcription Factor Family AT5G47370 57.1 4.5e-60 228.4
Csa07g02054 . 72 286 Homeobox Transcription Factor Family AT5G47370 51.8 7.4e-47 184.5
Csa06g03058 . 71 230 Homeobox Transcription Factor Family AT5G47370 63.6 6.9e-45 177.9
Csa03g03564 . 235 348 Homeobox Transcription Factor Family AT5G47370 82.6 5.8e-44 174.9
Csa03g02434 . 140 265 Homeobox Transcription Factor Family AT5G47370 67.7 2.5e-39 159.5
Csa01g02201 . 136 251 Homeobox Transcription Factor Family AT5G47370 69.0 9.0e-37 151.0
Csa06g03058 . 1 265 Homeobox Transcription Factor Family AT4G37790 64.4 1.5e-84 309.7
Csa03g02434 . 39 303 Homeobox Transcription Factor Family AT4G37790 56.7 3.9e-69 258.5
Csa04g02512 . 36 295 Homeobox Transcription Factor Family AT4G37790 52.2 8.2e-59 224.2
Csa03g00254 . 8 223 Homeobox Transcription Factor Family AT4G37790 53.4 2.8e-51 199.1
Csa07g02054 . 152 302 Homeobox Transcription Factor Family AT4G37790 66.2 7.0e-50 194.5
Csa03g03564 . 235 348 Homeobox Transcription Factor Family AT4G37790 82.5 3.5e-49 192.2
Csa03g00756 CCT 141 255 Homeobox Transcription Factor Family AT4G37790 77.4 6.8e-45 177.9
Csa01g02201 . 136 251 Homeobox Transcription Factor Family AT4G37790 73.3 9.2e-42 167.5
Csa03g02942 . 134 248 Homeobox Transcription Factor Family AT4G37790 70.4 2.9e-40 162.5
Csa03g00756 CCT 1 259 Homeobox Transcription Factor Family AT3G60390 59.1 1.4e-70 263.5
Csa03g00254 . 25 272 Homeobox Transcription Factor Family AT3G60390 60.6 1.8e-70 263.1
Csa07g02054 . 102 289 Homeobox Transcription Factor Family AT3G60390 61.2 3.0e-49 192.6
Csa06g03058 . 71 228 Homeobox Transcription Factor Family AT3G60390 62.9 7.4e-48 188.0
Csa03g03564 . 235 351 Homeobox Transcription Factor Family AT3G60390 81.4 4.8e-47 185.3
Csa03g02434 . 108 264 Homeobox Transcription Factor Family AT3G60390 60.3 1.9e-43 173.3
Csa01g02201 . 136 263 Homeobox Transcription Factor Family AT3G60390 66.4 1.0e-41 167.5
Csa03g02942 . 134 252 Homeobox Transcription Factor Family AT3G60390 65.0 1.8e-38 156.8
Csa04g02512 . 142 256 Homeobox Transcription Factor Family AT3G60390 67.8 2.4e-38 156.4
Csa06g03058 . 1 265 Homeobox Transcription Factor Family AT2G22800 61.4 2.5e-76 282.3
Csa03g02434 . 39 303 Homeobox Transcription Factor Family AT2G22800 54.5 3.5e-62 235.3
Csa04g02512 . 36 295 Homeobox Transcription Factor Family AT2G22800 52.4 9.0e-58 220.7
Csa03g00254 . 8 223 Homeobox Transcription Factor Family AT2G22800 56.3 6.9e-50 194.5
Csa07g02054 . 149 279 Homeobox Transcription Factor Family AT2G22800 71.8 1.7e-48 189.9
Csa03g03564 . 235 348 Homeobox Transcription Factor Family AT2G22800 78.9 3.2e-47 185.7
Csa03g00756 CCT 141 255 Homeobox Transcription Factor Family AT2G22800 73.9 3.7e-43 172.2
Csa03g02942 . 134 248 Homeobox Transcription Factor Family AT2G22800 69.6 1.1e-39 160.6
Csa01g02201 . 115 251 Homeobox Transcription Factor Family AT2G22800 63.5 2.5e-39 159.5
Csa06g00579 . 53 841 Homeobox Transcription Factor Family AT3G61150 66.0 7.0e-276 946.8
Csa03g01692 . 23 749 Homeobox Transcription Factor Family AT3G61150 58.2 6.8e-231 797.3
Csa07g00370 . 62 760 Homeobox Transcription Factor Family AT3G61150 52.1 4.2e-204 708.4
Csa04g02513 CCT 101 370 Homeobox Transcription Factor Family AT4G08150 80.3 1.3e-121 433.3
Csa02g01861 CCT 113 392 Homeobox Transcription Factor Family AT4G08150 62.8 6.6e-94 341.3
Csa06g03487 . 95 348 Homeobox Transcription Factor Family AT4G08150 56.6 4.8e-76 282.0
Csa05g02319 . 79 315 Homeobox Transcription Factor Family AT4G08150 55.7 5.1e-70 261.9
Csa07g00330 . 85 330 Homeobox Transcription Factor Family AT4G08150 56.2 1.1e-69 260.8
Csa02g01760 . 79 317 Homeobox Transcription Factor Family AT4G08150 52.4 2.0e-66 250.0
Csa05g02319 . 1 323 Homeobox Transcription Factor Family AT1G70510 60.4 1.6e-103 372.9
Csa02g01760 . 18 314 Homeobox Transcription Factor Family AT1G70510 56.6 8.6e-89 323.9
Csa04g02513 CCT 109 344 Homeobox Transcription Factor Family AT1G70510 52.5 3.9e-65 245.4
Csa04g02662 . 130 454 Homeobox Transcription Factor Family AT5G25220 80.1 7.1e-139 490.7
Csa02g02412 . 173 451 Homeobox Transcription Factor Family AT5G25220 82.9 7.1e-131 464.2
Csa05g00334 . 17 302 Homeobox Transcription Factor Family AT5G25220 67.9 1.3e-103 373.6
Csa04g02662 . 168 461 Homeobox Transcription Factor Family AT5G11060 82.8 1.1e-136 483.4
Csa02g02412 . 169 449 Homeobox Transcription Factor Family AT5G11060 77.9 9.4e-125 443.7
Csa05g00334 . 32 300 Homeobox Transcription Factor Family AT5G11060 68.4 2.5e-101 365.9
Csa04g02662 . 80 440 Homeobox Transcription Factor Family AT4G32040 60.1 3.2e-114 408.7
Csa02g02412 . 90 435 Homeobox Transcription Factor Family AT4G32040 62.8 8.2e-110 394.0
Csa05g00334 . 25 286 Homeobox Transcription Factor Family AT4G32040 63.8 1.5e-90 330.1
Csa05g02319 . 1 325 Homeobox Transcription Factor Family AT1G23380 67.9 7.6e-120 427.2
Csa02g01760 . 13 314 Homeobox Transcription Factor Family AT1G23380 59.4 5.3e-97 351.3
Csa04g02513 CCT 104 344 Homeobox Transcription Factor Family AT1G23380 55.3 2.7e-69 259.2
Csa02g00505 . 59 297 Homeobox Transcription Factor Family AT1G23380 53.5 2.3e-68 256.1
Csa06g03487 . 95 335 Homeobox Transcription Factor Family AT1G23380 50.2 3.7e-66 248.8
Csa05g00334 . 1 300 Homeobox Transcription Factor Family AT1G62990 78.9 1.2e-129 459.5
Csa04g02662 . 177 454 Homeobox Transcription Factor Family AT1G62990 65.5 1.5e-98 356.3
Csa02g02412 . 173 449 Homeobox Transcription Factor Family AT1G62990 65.1 3.6e-97 351.7
Csa03g04584 . 3 781 Homeobox Transcription Factor Family AT4G17710 50.6 3.7e-188 655.2
Csa05g02432 . 4 299 Homeobox Transcription Factor Family AT1G26960 58.6 4.6e-64 241.5
Csa05g02973 . 1 296 Homeobox Transcription Factor Family AT3G01220 53.0 5.5e-50 194.9
Csa01g00502 . 1 501 Homeobox Transcription Factor Family AT1G17920 59.6 8.0e-156 547.7
Csa01g00502 . 19 502 Homeobox Transcription Factor Family AT1G73360 62.8 5.8e-173 604.7
Csa03g01781 . 28 553 Homeobox Transcription Factor Family AT1G73360 50.6 3.4e-149 525.8
Csa05g02409 . 1 191 Homeobox Transcription Factor Family AT1G27050 51.9 1.0e-50 196.8
Csa05g01220 . 33 192 Homeobox Transcription Factor Family AT1G70920 59.5 9.0e-43 170.2
Csa05g02044 . 33 196 Homeobox Transcription Factor Family AT1G70920 54.9 6.0e-39 157.5
Csa02g02688 . 62 758 Homeobox Transcription Factor Family AT1G05230 82.4 0.0e+00 1098.2
Csa07g00370 . 49 759 Homeobox Transcription Factor Family AT1G05230 77.4 1.1e-312 1068.9
Csa06g03532 CCT 21 719 Homeobox Transcription Factor Family AT1G05230 63.9 3.2e-248 854.7
Csa01g01099 CCT 62 737 Homeobox Transcription Factor Family AT1G05230 65.2 8.8e-246 846.7
Csa06g00579 . 111 841 Homeobox Transcription Factor Family AT1G05230 55.7 1.2e-213 740.0
Csa06g03219 . 9 217 Homeobox Transcription Factor Family AT2G18550 51.4 8.0e-41 164.1
Csa04g00524 . 1 150 Homeobox Transcription Factor Family AT2G18550 58.6 1.8e-37 152.9
Csa02g02688 . 78 758 Homeobox Transcription Factor Family AT2G32370 55.6 8.4e-204 707.2
Csa07g00370 . 67 758 Homeobox Transcription Factor Family AT2G32370 53.4 1.5e-200 696.4
Csa06g00579 . 105 838 Homeobox Transcription Factor Family AT5G52170 51.2 4.2e-197 684.9
Csa03g01692 . 1 750 Homeobox Transcription Factor Family AT5G52170 50.6 4.3e-194 674.9
Csa03g04584 . 14 781 Homeobox Transcription Factor Family AT5G46880 58.2 2.3e-250 862.1
Csa06g03655 . 12 1476 Homeobox Transcription Factor Family AT1G28420 52.1 0.0e+00 1130.2
Csa03g03494 . 184 466 Homeobox Transcription Factor Family AT2G16400 56.4 6.8e-77 285.0
Csa06g02470 . 188 471 Homeobox Transcription Factor Family AT2G16400 54.6 1.0e-72 271.2
Csa02g01490 . 239 505 Homeobox Transcription Factor Family AT2G16400 51.6 1.2e-65 247.7
Csa05g00256 . 149 394 Homeobox Transcription Factor Family AT2G16400 51.0 1.8e-61 233.8
Csa01g01369 . 439 629 Homeobox Transcription Factor Family AT2G16400 55.2 1.5e-52 204.1
Csa04g01545 CCT,ECH 171 331 Homeobox Transcription Factor Family AT2G16400 52.0 3.4e-44 176.4
Csa03g03143 CCT,ECH 168 335 Homeobox Transcription Factor Family AT2G27220 51.5 5.2e-44 175.6
Csa03g03494 . 1 717 Homeobox Transcription Factor Family AT2G35940 50.7 3.1e-152 535.8
Csa07g02163 . 155 418 Homeobox Transcription Factor Family AT2G35940 52.0 4.9e-65 246.1
Csa06g02874 . 285 558 Homeobox Transcription Factor Family AT2G35940 50.7 1.1e-64 245.0
Csa01g01369 . 439 634 Homeobox Transcription Factor Family AT2G35940 60.6 1.4e-59 228.0
Csa03g03143 CCT,ECH 168 331 Homeobox Transcription Factor Family AT2G35940 53.7 1.4e-48 191.4
Csa05g00256 . 223 390 Homeobox Transcription Factor Family AT4G34610 62.5 4.0e-54 209.5
Csa04g01545 CCT,ECH 188 331 Homeobox Transcription Factor Family AT4G34610 55.4 1.3e-41 167.9
Csa02g02688 . 38 755 Homeobox Transcription Factor Family AT4G04890 73.4 3.4e-301 1030.8
Csa07g00370 . 56 759 Homeobox Transcription Factor Family AT4G04890 74.5 6.4e-300 1026.5
Csa06g03532 CCT 1 716 Homeobox Transcription Factor Family AT4G04890 68.6 1.8e-278 955.3
Csa01g01099 CCT 1 737 Homeobox Transcription Factor Family AT4G04890 66.8 2.7e-274 941.4
Csa06g00579 . 105 840 Homeobox Transcription Factor Family AT4G04890 55.0 4.7e-218 754.6
Csa03g01692 . 18 748 Homeobox Transcription Factor Family AT4G04890 51.0 1.9e-195 679.5
Csa01g00502 . 12 497 Homeobox Transcription Factor Family AT4G04890 50.5 1.7e-119 427.2
Csa01g02179 . 142 570 Homeobox Transcription Factor Family AT4G29940 59.0 1.8e-132 470.3
Csa06g01195 CCT,ECH 1 842 Homeobox Transcription Factor Family AT5G60690 80.9 0.0e+00 1369.0
Csa01g02627 . 1 845 Homeobox Transcription Factor Family AT5G60690 67.0 0.0e+00 1108.6
Csa07g02448 . 9 838 Homeobox Transcription Factor Family AT5G60690 65.6 3.7e-312 1067.4
Csa03g04545 . 20 843 Homeobox Transcription Factor Family AT5G60690 63.0 1.6e-299 1025.4
Csa06g03845 . 1 727 Homeobox Transcription Factor Family AT5G60690 64.3 1.9e-271 932.2
Csa01g01393 CCT,ECH 3 177 Homeobox Transcription Factor Family AT5G60690 73.1 1.4e-61 235.0
Csa06g03487 . 89 352 Homeobox Transcription Factor Family AT1G62360 79.2 3.5e-116 415.2
Csa07g00330 . 95 344 Homeobox Transcription Factor Family AT1G62360 71.0 1.9e-98 356.3
Csa04g02513 CCT 108 348 Homeobox Transcription Factor Family AT1G62360 61.0 4.6e-76 282.0
Csa05g02319 . 82 324 Homeobox Transcription Factor Family AT1G62360 52.6 2.4e-64 243.0
Csa02g00505 . 57 299 Homeobox Transcription Factor Family AT1G62360 52.2 3.8e-62 235.7
Csa02g01760 . 79 307 Homeobox Transcription Factor Family AT1G62360 55.2 6.4e-62 235.0
Csa02g01861 CCT 120 369 Homeobox Transcription Factor Family AT1G62360 51.4 1.4e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000957 1 7 2 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 3 3 2 2 12 5 1 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31645 PF03791 KNOX2 1.90E-21 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02662 Csa_Chr04 FPKM 33.265411 37.066589 57.920422 57.337597 12.171772 10.75985 10.646678 40.720783 38.159744 34.876774