Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02674 | ATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG | 975 | 43.18 | MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLGTEVDGANYSKHGD* | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25980637 | 25983088 | - | CsaV3_4G037000.1 | Csa04g02674 | 528284 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02674 | 324 | CDD | ARID_HMGB9-like | 31 | 116 | IPR045303 | GO:0003677 | |
Csa04g02674 | 324 | CDD | HMGB-UBF_HMG-box | 238 | 302 | - | - | |
Csa04g02674 | 324 | ProSiteProfiles | ARID domain profile. | 29 | 120 | IPR001606 | GO:0003677 | |
Csa04g02674 | 324 | SUPERFAMILY | ARID-like | 26 | 128 | IPR036431 | GO:0003677 | |
Csa04g02674 | 324 | SUPERFAMILY | HMG-box | 235 | 308 | IPR036910 | - | |
Csa04g02674 | 324 | Pfam | ARID/BRIGHT DNA binding domain | 35 | 116 | IPR001606 | GO:0003677 | |
Csa04g02674 | 324 | Gene3D | High mobility group box domain | 222 | 315 | IPR036910 | - | |
Csa04g02674 | 324 | SMART | bright_3 | 30 | 121 | IPR001606 | GO:0003677 | |
Csa04g02674 | 324 | Coils | Coil | 294 | 314 | - | - | |
Csa04g02674 | 324 | SMART | ARID_2 | 26 | 116 | - | - | |
Csa04g02674 | 324 | Pfam | HMG (high mobility group) box | 238 | 305 | IPR009071 | - | |
Csa04g02674 | 324 | Gene3D | - | 24 | 126 | IPR036431 | GO:0003677 | |
Csa04g02674 | 324 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 238 | 305 | IPR009071 | - | |
Csa04g02674 | 324 | MobiDBLite | consensus disorder prediction | 219 | 235 | - | - | |
Csa04g02674 | 324 | MobiDBLite | consensus disorder prediction | 214 | 244 | - | - | |
Csa04g02674 | 324 | SMART | hmgende2 | 237 | 306 | IPR009071 | - | |
Csa04g02674 | 324 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 15 | 312 | - | - | |
Csa04g02674 | 324 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 15 | 312 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00936 | Csa-Chr2:8837264 | Csa04g02674 | Csa-Chr4:25980637 | 1.49E-91 | dispersed | |
Csa03g00010 | Csa-Chr3:231248 | Csa04g02674 | Csa-Chr4:25980637 | 1.69E-07 | dispersed | |
Csa04g02674 | Csa-Chr4:25980637 | Csa05g00286 | Csa-Chr5:1780186 | 3.62E-07 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31646 | PF01388 | ARID | 3.00E-18 | CL0123 | Csa | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02674 | - | - | csv:101219101 | 649.432 |