Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02674 ATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG 975 43.18 MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLGTEVDGANYSKHGD* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25980637 25983088 - CsaV3_4G037000.1 Csa04g02674 528284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02674 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Csa04g02674 324 CDD HMGB-UBF_HMG-box 238 302 - -
Csa04g02674 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Csa04g02674 324 SUPERFAMILY ARID-like 26 128 IPR036431 GO:0003677
Csa04g02674 324 SUPERFAMILY HMG-box 235 308 IPR036910 -
Csa04g02674 324 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Csa04g02674 324 Gene3D High mobility group box domain 222 315 IPR036910 -
Csa04g02674 324 SMART bright_3 30 121 IPR001606 GO:0003677
Csa04g02674 324 Coils Coil 294 314 - -
Csa04g02674 324 SMART ARID_2 26 116 - -
Csa04g02674 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Csa04g02674 324 Gene3D - 24 126 IPR036431 GO:0003677
Csa04g02674 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Csa04g02674 324 MobiDBLite consensus disorder prediction 219 235 - -
Csa04g02674 324 MobiDBLite consensus disorder prediction 214 244 - -
Csa04g02674 324 SMART hmgende2 237 306 IPR009071 -
Csa04g02674 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 312 - -
Csa04g02674 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02674 - - - csv:101219101 649.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00936 Csa-Chr2:8837264 Csa04g02674 Csa-Chr4:25980637 1.49E-91 dispersed
Csa03g00010 Csa-Chr3:231248 Csa04g02674 Csa-Chr4:25980637 1.69E-07 dispersed
Csa04g02674 Csa-Chr4:25980637 Csa05g00286 Csa-Chr5:1780186 3.62E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00936 . 19 384 ARID Transcription Factor Family AT1G04880 56.2 7.2e-105 377.9
Csa03g00010 . 199 478 ARID Transcription Factor Family AT1G20910 60.5 3.0e-91 332.4
Csa04g02674 . 16 310 ARID Transcription Factor Family AT1G76110 68.2 2.1e-112 402.5
Csa03g00010 . 187 508 ARID Transcription Factor Family AT1G76510 60.5 2.7e-109 392.5
Csa03g02792 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.8 1.1e-267 919.5
Csa07g02313 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 58.0 7.9e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31646 PF01388 ARID 3.00E-18 CL0123 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02674 Csa_Chr04 FPKM 4.962078 6.006143 6.869852 5.557992 5.73307 6.457854 7.267162 8.045216 7.539178 8.482818