Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02674 ATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG 975 43.18 MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLGTEVDGANYSKHGD* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25980637 25983088 - CsaV3_4G037000.1 Csa04g02674 528284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02674 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Csa04g02674 324 CDD HMGB-UBF_HMG-box 238 302 - -
Csa04g02674 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Csa04g02674 324 SUPERFAMILY ARID-like 26 128 IPR036431 GO:0003677
Csa04g02674 324 SUPERFAMILY HMG-box 235 308 IPR036910 -
Csa04g02674 324 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Csa04g02674 324 Gene3D High mobility group box domain 222 315 IPR036910 -
Csa04g02674 324 SMART bright_3 30 121 IPR001606 GO:0003677
Csa04g02674 324 Coils Coil 294 314 - -
Csa04g02674 324 SMART ARID_2 26 116 - -
Csa04g02674 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Csa04g02674 324 Gene3D - 24 126 IPR036431 GO:0003677
Csa04g02674 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Csa04g02674 324 MobiDBLite consensus disorder prediction 219 235 - -
Csa04g02674 324 MobiDBLite consensus disorder prediction 214 244 - -
Csa04g02674 324 SMART hmgende2 237 306 IPR009071 -
Csa04g02674 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 312 - -
Csa04g02674 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00936 Csa-Chr2:8837264 Csa04g02674 Csa-Chr4:25980637 1.49E-91 dispersed
Csa03g00010 Csa-Chr3:231248 Csa04g02674 Csa-Chr4:25980637 1.69E-07 dispersed
Csa04g02674 Csa-Chr4:25980637 Csa05g00286 Csa-Chr5:1780186 3.62E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31646 PF01388 ARID 3.00E-18 CL0123 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02674 - - csv:101219101 649.432