Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02676 ATGGAAGAAGAACCGCCAACTGAAACCAGAAGGTCACCGCCACAACCGTTGATCGAAGAACCCCAACCGAAGAAGCTCAAAATGTCATCTACAACCACCACATCCGACGACGAAGATGTTAATTCCAACTCTGCCGCGCCCAAGAAACAAAGGTACAAGCGCCGCAAGGTTGCCATTTTTTTTGCCTACTGTGGCGTCGGTTACCAAGGGATGCAGAAGAACCCTGGCGCTAAAACCATTGAAGCTGACCTTGAAGAAGCCTTATATCTCGCCGGAGCCGTACCTGAGCAGGACCGAGGGCTCTCGAAGCGCTATGATTGGGCCCGCTCGGCTCGCACTGATAAGGGCGTGAGCGCCGTGGGTCAGGTCGTTTCTGGTCGCTTTTACATCGATCCACCAGGTTTTGTTGATCGTCTCAATTCGAATCTTTCGCCTCAGATTCGAATTTTCGGGTACAAGCGCGTCACAGCGTCATTCAATGCGAAAAAGTTCTGCGATCGGAGAAGGTATGTATACCTAATCCCTGTCTTCGCTCTCGATCCCAATTGCCATCGTGATAGAGAAAGTGTGAAAGCTAGTTTAGGGTCTGATAACGAGCTTGTGAAGTGCTTAGAGTGCTCTGAACGAGGACGCAAGGTCGAAGGCTTGATAGGCAAGCGCAATTTCGAAGTAAAAACTGCGATAACTGAGTCAGACATTTCGTCGAACACTGTTAACGCCATTGAAGTTTCTGATGTTCAAGCAAATGGGGTTTTGGAGGACAGTGCCACGACCTCTGATTCTAACAAACAAACTAGCGTTTTAGTAGAAAACACTGCTACTGAACTCAATGTTGGAAGCGAAGGTACTGCAAAAAGTGAAAGCAGTGAAATGTCTGGATTAGGGAGTGATTCAGAGATTGTTGTAAGCAAAGAGAGCGTTAATGGGAAAGAGAAATCTTCAGGGAGCTTCAAGTACGGCGAGGAGGAGAAGGCTAGGTTCAATAGGATTTTGAAACATTATGTGGGAACTCATAACTTCCACAATTTTACTACTAGAACAAAAGCAGAGGATCCTGCTGCTCGTCGATTCATTGTTTCGTTTGATGCTTCTGCAATCGTCGTGGTTGAAGGCATTGAATTTGTGAAATGTGAAGTTGTAGGGCAGAGTTTCATGCTTCATCAGATCCGTAAGATGATGGGTCTTGCTGTGGCAATCATGAGGAACTGTGCTCCAGAGTCATTGATCGAGAAAGCTTTGCAAAAGGATGTAAATATCAATGTGCCCACTGCACCTGAGGTTGGGCTGTACCTAGATGAGTGCCTATTCACATCATATAATCAAAAGTGGAAAGACACTCATGAAGAGGTATCCATGAAAGCATACGAAGAGGCAGCAGAAGATTTCAAAATGAAACAAATATATTCTCACATTGCTTCCACAGAGCACAAAGATGGAGCCGTGGCCTTATGGTTGCATTCTCTAAATCATCGAAATTATCCAGATTTACGTGTCATTGATGAAGTTGCTAAAATTGCTAAGAACGCAAGTCTTGACATGGAGACGCAAGCTGAAACTTAA 1560 45.38 MEEEPPTETRRSPPQPLIEEPQPKKLKMSSTTTTSDDEDVNSNSAAPKKQRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLIGKRNFEVKTAITESDISSNTVNAIEVSDVQANGVLEDSATTSDSNKQTSVLVENTATELNVGSEGTAKSESSEMSGLGSDSEIVVSKESVNGKEKSSGSFKYGEEEKARFNRILKHYVGTHNFHNFTTRTKAEDPAARRFIVSFDASAIVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDTHEEVSMKAYEEAAEDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRVIDEVAKIAKNASLDMETQAET* 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25990334 25992010 - CsaV3_4G037020.1 Csa04g02676 528286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02676 519 MobiDBLite consensus disorder prediction 254 295 - -
Csa04g02676 519 CDD PseudoU_synth_PUS1_PUS2 59 436 IPR041708 GO:0009982|GO:0031119
Csa04g02676 519 PANTHER PSEUDOURIDYLATE SYNTHASE 31 497 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Csa04g02676 519 Pfam tRNA pseudouridine synthase 331 436 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Csa04g02676 519 Gene3D - 45 165 IPR020094 GO:0003723|GO:0009982
Csa04g02676 519 Gene3D - 299 499 IPR020095 GO:0003723|GO:0009982
Csa04g02676 519 MobiDBLite consensus disorder prediction 1 49 - -
Csa04g02676 519 MobiDBLite consensus disorder prediction 25 47 - -
Csa04g02676 519 PANTHER TRNA PSEUDOURIDINE SYNTHASE 31 497 - -
Csa04g02676 519 SUPERFAMILY Pseudouridine synthase 53 446 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02676 K06173 truA, PUS1; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] - csv:101219581 1014.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02563 Csa-Chr1:22524354 Csa04g02676 Csa-Chr4:25990334 5.92E-09 dispersed
Csa04g02676 Csa-Chr4:25990334 Csa06g00484 Csa-Chr6:4087020 3.32E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g144 . Blo12g00869 . Bda03g00305 . Bpe04g00267 Bma04g00269 . . . . Cma09g00077 . . . Cpe06g00041 . . . . . . . . . . . . . . . . Cone7ag1918 . . Lsi04g01786 Csa04g02676 . . . . . . . . . . Sed01g2458 . Cmo09g00076 . . . Car09g00067 . . Bhi09g02939 Tan01g5065 Cmetu07g1422 . Hepe01g2313 Mch11g0079 . Cla05g01587 Cam05g1696 Cec05g1697 Cco05g1748 Clacu05g1683 Cmu05g1573 Cre05g1690 . . . Cme07g00081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008390 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02676 Csa_Chr04 FPKM 3.413399 2.990753 4.288244 3.324983 3.116081 1.959597 3.25939 2.603923 3.414419 3.920924