Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02679 ATGGTCTCATTCCGCTTCGCTTTTCCTTATATCATCCCGTTATCCTTCTCTCCTCTCTTCCCGCCTCGGCTCCCTCCTTCCTCTCTCTCCTCTCTCTCTTCTCCATTTCCCTTTCTTCGCTCTTCTTCTTCCTTCTTCAACCACTCTCCACGGAGGATGGGATCTCTCTCTGCTCTCATCGATCCATTCCTCTACCCTACTGCTCGCCGAGATGACTCCGTTGTCGACGATTATCACGGCTGTCAGATCGTTGACCCTTACCGATGGCTTGAAGATCCTGACGCGGATGAAGTGAAGGAGTTTGTGGAGAAACAGGTGAAATTGACGGAATCGGTGCTTCAGAAGTGTGATACTAGAGAGAAGCTTCGCGCGAAGATTACTGAACAATTTGATCATCCGCGATATGATCCACCGTTTAAGCGAGGGAATAAGTACTTTTACTTTCACAATACTGGCCTTCAGGCGCAGAACATTCTTTATGTCCAGGATAGTTTGGATGGAGAACCTGAGGTTTTGTTGGATCCTAATGCGCTAAGTGAAGATGGAACAGTTTCGCTGAGTAATCTCTCAGTTAGTAAGGATGCGAAATACTTGGCCTATGGCCTTAGTTCAAGCGGCAGTGATTGGGTGAAAATTAAAGTCATGCGAATTGATGATAAGAAAGCTGAACCGGATACATTATCATGGGTTAAGTTTTCAAGTATTAGTTGGACAGTTGATGGCAAAGGTTTTTTCTACAGTCGCTATCCTGCTCCCAAAGAAGTAGGAACTTTGGATGCTGGTACGGAGACGAATGCAAATCTTTATCATGAGTTATACTACCATTTCTTGGGAACTGATCAATCTGATGATGTATTATGTTGGAGAGATCAAGATCATCCTAAATACCTCTTTTCGGCCTCTGTTACTGATGATGGAAAGTATGTACTTATGCCAATTGAGGAGGGTTGCGATCCAGTCAACAAATTCTACTATTGTAACATATCGGCACTTCCTAATGGACTTGAAGGCTTCAAGGGGAAAAATGACCTGCTCCCTTTTACAAAACTTATTGACGACTTTGATGCTCAGTATTACGCTATTGCAAATGATGATACATTGTTCACCTTTATAACGAATAAAAATGCTCCTAAATATAAGCTTGTAAGGGTTGATCTGAATGATCCTACAGTATGGACAGAACTACTTCCAGAATCTGACAAGGATGTGCTAGAATCTGCATGTGCTGTTAATGGAGACCAAATGATAGTGAGCTACTTGAGTGATGTTAAATATGTTTTGCAGATAAGGGACTTGAAGTCAGGTTCCTTGTTGCATCAACTACCCATCGATATTGGCACGGTTAATGGAATCTCTGCTAGGCGTGAAGATAGTTTAATTTTCATAGGGTTTACTAGCTTTCTTACGCCTGGAATTATTTATCAGTGTAATTTGGAGAGTGGGACTCCAGATCTGAAGATATTCCGTGAAACTGTTGTTCCTGGATTTGAGCGTTCAGCATTCAATGTTGACCAGGTTTTCGTACGTAGTAAAGATGGCACAAATATACCAATGTTTGTCGTGGCACGAAAGAATATTGTGTTTGATGGATCACACCCTTGCTTGCTATATGGGTACGGAGGATTTAACATTAGCTTGACCCCATCTTTCAGTGTGAGTCGTACGGTACTCATGAGGCATTTAGGTGCTGTTTTCTGCGTTGCTAACATTCGTGGTGGCGGAGAATATGGGGAGGAATGGCACAAAGCAGGTTCTCTTGCGAAGAAGCAGAATTGCTTTGATGATTTCATTTCTTCTGCGGAGTATCTTATTTCTGCTGGTTATACCCAGCCCAGTAAATTGTGTATTGAAGGTGGAAGCAATGGAGGGCTTCTCGTTGGAGCTTGCATCAATCAGAGACCTGATCTGTTCGGTTGCGCATTGGCTCATGTTGGTGTAATGGACATGCTGCGATTTCATAAGTTTACAATAGGTCATGCCTGGACTTCGGATTATGGTTGTTCGGACAATGAGGAAGAGTTCAAGTGGCTAATCAAGTATTCTCCACTCCACAATGTGAAGAGGCCATGGGAACAGCATCCTGATCGACTTTTACAATACCCATCAACCATGCTATTAACTGCTGATCATGATGATCGTGTTGTGCCATTGCATTCACTGAAGTTATTGGCGACAATGCAATATGTTCTATGCACGAGTTTGGAGAAAAGCCCTCAAACCAACCCAATAATTGGTCGCATAGAGTGCAAAGCGGGCCATGGAGCCGGCCGTCCTACGCAGAAAATGATTGATGAAGCATCAGACCGATATGCGTTCATGGCAATGATGTTGGCAGCAACATGGATTGATTAG 2352 43.24 MVSFRFAFPYIIPLSFSPLFPPRLPPSSLSSLSSPFPFLRSSSSFFNHSPRRMGSLSALIDPFLYPTARRDDSVVDDYHGCQIVDPYRWLEDPDADEVKEFVEKQVKLTESVLQKCDTREKLRAKITEQFDHPRYDPPFKRGNKYFYFHNTGLQAQNILYVQDSLDGEPEVLLDPNALSEDGTVSLSNLSVSKDAKYLAYGLSSSGSDWVKIKVMRIDDKKAEPDTLSWVKFSSISWTVDGKGFFYSRYPAPKEVGTLDAGTETNANLYHELYYHFLGTDQSDDVLCWRDQDHPKYLFSASVTDDGKYVLMPIEEGCDPVNKFYYCNISALPNGLEGFKGKNDLLPFTKLIDDFDAQYYAIANDDTLFTFITNKNAPKYKLVRVDLNDPTVWTELLPESDKDVLESACAVNGDQMIVSYLSDVKYVLQIRDLKSGSLLHQLPIDIGTVNGISARREDSLIFIGFTSFLTPGIIYQCNLESGTPDLKIFRETVVPGFERSAFNVDQVFVRSKDGTNIPMFVVARKNIVFDGSHPCLLYGYGGFNISLTPSFSVSRTVLMRHLGAVFCVANIRGGGEYGEEWHKAGSLAKKQNCFDDFISSAEYLISAGYTQPSKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDNEEEFKWLIKYSPLHNVKRPWEQHPDRLLQYPSTMLLTADHDDRVVPLHSLKLLATMQYVLCTSLEKSPQTNPIIGRIECKAGHGAGRPTQKMIDEASDRYAFMAMMLAATWID* 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26018680 26024656 + CsaV3_4G037050.1 Csa04g02679 528289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02679 783 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 533 551 IPR002470 GO:0004252|GO:0006508
Csa04g02679 783 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 560 584 IPR002470 GO:0004252|GO:0006508
Csa04g02679 783 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 588 607 IPR002470 GO:0004252|GO:0006508
Csa04g02679 783 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 618 638 IPR002470 GO:0004252|GO:0006508
Csa04g02679 783 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 700 722 IPR002470 GO:0004252|GO:0006508
Csa04g02679 783 PANTHER PROLYL OLIGOPEPTIDASE-LIKE PROTEIN 49 783 - -
Csa04g02679 783 Pfam Prolyl oligopeptidase family 548 777 IPR001375 GO:0006508|GO:0008236
Csa04g02679 783 SUPERFAMILY alpha/beta-Hydrolases 502 727 IPR029058 -
Csa04g02679 783 PANTHER PROLYL ENDOPEPTIDASE 49 783 - -
Csa04g02679 783 Gene3D - 133 492 - -
Csa04g02679 783 SUPERFAMILY Peptidase/esterase 'gauge' domain 63 483 - -
Csa04g02679 783 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 66 484 IPR023302 GO:0004252
Csa04g02679 783 Gene3D alpha/beta hydrolase 74 773 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02679 K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] - csv:101220524 1557.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02679 Csa-Chr4:26018680 Csa05g02093 Csa-Chr5:24208059 6.93E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g141 Blo01g01617 Blo12g00866 . Bda03g00306 Bpe02g00328 Bpe04g00268 Bma04g00270 Bma01g02391 . . Cma01g01994 Cma09g00073 Car01g01566 . . Cpe06g00040 . . . . . . . . . . . . . . . . . . Cone20ag0048 Lsi04g01788 Csa04g02679 . . . . Bda11g00953 . . . . . Sed13g2170 Cmo01g02056 Cmo09g00074 . . . Car09g00064 . Cpe02g00051 Bhi09g02937 Tan01g5069 Cmetu07g0799 . Hepe01g2316 Mch11g0077 . Cla05g01584 Cam05g1692 Cec05g1695 Cco05g1742 Clacu05g1681 Cmu05g1572 Cre05g1689 . . Chy07g00370 Cme07g00079
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005910 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02679 Csa_Chr04 FPKM 4.099433 3.94989 4.372749 4.176061 8.877632 7.774312 7.972731 8.123184 8.704458 7.90866