Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02685 ATGGCGGAGTACGGCGGCGAGAATCTGGAAGTGGATCCAAGAAGCGGTTTCTGTAAGTCTACAAAAATCTTCAACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACCAATCCCTCGATGCCACGACGTTCATCTCTTCCCGTCCTCACAACGGCAAAATCGCCCTCATCGACGCCTCCACCGGCCATCACATAACCTACTCCGATCTCTGGAACGCCGTCCACTCCGTCGCCTCTTCCCTTTCCGACATGGGCATCAGAAAAGGCCACGTCATCCTCCTCCTTTCCCCAAATTCTATCCACTTCCCCATTATTTGCCTCGCCGTCATGTCCATCGGCGCCATCATCACCACCACAAATCCCCTCAATACTCCCCAAGAAATCTCCAAGCAAATATCAGATTCCAAACCGATTTTAGCCTTCACTACTCAAGCATTAATCCCCAAAATCGCCACTTCCAAATTACCAGTCGTCGTAATCGATGGGCAGATTCCGAAATCCCAAGCGAAAATCGTGTCGACATTGAGCGAAATGATGAGGAAAAAACCAAGTGGGAGTCAAATCAAGGAACGCGTGGAGCAAAACGACACAGCGACTCTGCTTTATTCCTCTGGAACGACAGGCGCGAGCAAAGGCGTGGTGTCGTCTCACAAGAATCTAATCGCCATGGTTCAAGTGGTTGTAACCAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATCTGTACGGTCCCGATGTTTCATATTTACGGCCTTGTAGCGTTCGCTACGGGGCTGCTTTCCTCAGGATCGACTATCGTCGTATTGTCGAAATTTGAGATTCATGAAATGTTATCAGCGATTGAGAAGTACAAGGCTACGTATTTGCCTCTCGTGCCGCCGATTTTGGTGGCGCTGGTGAACGCCGCCGAGCAAATAAAAGGAAAGTACGATCTGGGGTCGTTACACACGGCACTTTCCGGCGGAGCGCCGCTGGGGAAGGAGGTGATTGAGGGTTTTGTTGAGAAATTTCCGAATGTTGCGATTCTTCAGGGTTATGGATTGACGGAGTCCACCGGAATTGGGGCGTCTACTGATTCTTTGGAGGAGAGTCGTCGGTACGGCACGGCGGGGCTTCTGTCGCCGAGTACTGAAGGGATGATTGTTGACCCGGAAACCGGTGAGGCTCTTCCTGTGAACCGAACCGGAGAGCTTTGGCTTAGAGGCCCCACCGTCATGAAAGGGTATTTTGGTAACGTGGAAGCAACAAGTTCAACCCTTGATTCAGCGGGATGGTTGAGAACCGGTGATCTGTGTTATATTGACGAAGATGGTTTTATTTTTGTGGTTGATAGGCTTAAGGAACTCATCAAATATAAGGGTTATCAGGTGCCACCAGCAGAATTAGAGGCATTGTTGCTTACTCATCCTAATATCTCTGATGCTGCTGTGATACCATATCCGGACAAGGATGTTGGACAATTTCCTATGGCTTATGTGGTAAGAAAGGTTGGAAGTGACATTTCGCACAACGACGTTATGCAATTTGTAGCAAAACAGGTGGCACCCTACAAGAGAATTCGACGGGTGGCGTTTGTGGATTCCATTCCCAAGAATCCATCTGGTAAAATACTGAGAAAGGATCTTATAAAGCTCGCAACCTCCAAACTCTAA 1653 49.0 MAEYGGENLEVDPRSGFCKSTKIFNSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDASTGHHITYSDLWNAVHSVASSLSDMGIRKGHVILLLSPNSIHFPIICLAVMSIGAIITTTNPLNTPQEISKQISDSKPILAFTTQALIPKIATSKLPVVVIDGQIPKSQAKIVSTLSEMMRKKPSGSQIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYKATYLPLVPPILVALVNAAEQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKFPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTVMKGYFGNVEATSSTLDSAGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIPYPDKDVGQFPMAYVVRKVGSDISHNDVMQFVAKQVAPYKRIRRVAFVDSIPKNPSGKILRKDLIKLATSKL* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26054439 26057668 - CsaV3_4G037110.1 Csa04g02685 528295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02685 550 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Csa04g02685 550 Pfam AMP-binding enzyme 50 452 IPR000873 -
Csa04g02685 550 PANTHER 4-COUMARATE--COA LIGASE-LIKE 3-RELATED 11 549 - -
Csa04g02685 550 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Csa04g02685 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 549 - -
Csa04g02685 550 CDD 4CL 33 542 - -
Csa04g02685 550 Gene3D - 448 549 IPR045851 -
Csa04g02685 550 Gene3D - 21 447 IPR042099 -
Csa04g02685 550 SUPERFAMILY Acetyl-CoA synthetase-like 47 547 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00946 Csa-Chr1:5872757 Csa04g02685 Csa-Chr4:26054439 1.13E-168 dispersed
Csa01g00947 Csa-Chr1:5879598 Csa04g02685 Csa-Chr4:26054439 1.60E-169 dispersed
Csa02g00886 Csa-Chr2:8265069 Csa04g02685 Csa-Chr4:26054439 1.07E-15 dispersed
Csa03g02735 Csa-Chr3:26182940 Csa04g02685 Csa-Chr4:26054439 2.20E-155 dispersed
Csa03g03295 Csa-Chr3:30061837 Csa04g02685 Csa-Chr4:26054439 2.88E-150 dispersed
Csa04g02685 Csa-Chr4:26054439 Csa05g02765 Csa-Chr5:28373355 6.24E-155 dispersed
Csa05g00464 Csa-Chr5:3013509 Csa04g02685 Csa-Chr4:26054439 1.22E-61 dispersed
Csa05g01470 Csa-Chr5:16601391 Csa04g02685 Csa-Chr4:26054439 2.53E-30 dispersed
Csa06g03391 Csa-Chr6:28132320 Csa04g02685 Csa-Chr4:26054439 1.05E-39 dispersed
Csa04g02685 Csa-Chr4:26054439 Csa01g01352 Csa-Chr1:8805865 2.01E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02685 K10526 - csv:101221396 1071.61