Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02698 ATGGCTGGATCGGATGAGAACAATCCTGGAGTGATCGGACGGGCAAATCTCCATGGGAGTTTACGAATTGGTGGTGGTGGCGGTGGCAAATTGGTCGTGGGGATGGGTCAAAACCGCAGAGCTTTGAGCAGCATTAATGGAAATGTTGCAGCAGCACCTCCTGTCCCTCATCCCTGTGCAGTCCTGAAAAGAGGCTTAACAGAAACTGAAGTTTTCCTCAACAATAAAGACCCTCCGATTCCAATTCATCGACCCATCACTCGGAAGTTTGCAGCTCAGCTGGCGAATAAGCACCAACCACCTGTGCCTGAGGTAGATAAAAAACCACTGCAATCTGCTGTAACTAGAAAAGAGTTTTCAGATCATCACACCACCATAGAGGAAGATGATTCCATGGGTGAATCAGCAGTTCCAATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAACCAGTCACTGACATAGACAGCCGCGATAAAAGTGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTACTATAGGAAATCCGAGGTTTCTGGCTGTGTCTCACCAAACTACATGGCTCAGCAAGCAGATATCAACGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACATTGTACTTAACAGTCAACCTGATTGACAGATTCTTAGCGGTTCACTCAGTTGTGAGAAAGAAACTCCAGCTTGTTGGAGTGACAGCCATGCTTATTGCCTGCAAGTATGAAGAGGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCTGACAAGGCCTACAGCCGGAAAGAAGTTCTTGACATGGAGAAGTTGATGATCAATACTTTACAGTTCAATCTGTCTGTTCCAACTCCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGACCTCCTCTCTTTCTTCATGGTGGAGCTCTGTCTAGTAGAATATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGCACATTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAGTGGCACACTGGGTATTCACAAGAACAACTTCTGGAATGTTCAAAGCTGATGGTGGGGTTTCATAAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAGTATTGCACATCAAAGTTTGGATATGCTGCTAGAAGTGAGCCAGCAGGCTTTCTATTGGAAGAAAGATTGTGA 1323 44.52 MAGSDENNPGVIGRANLHGSLRIGGGGGGKLVVGMGQNRRALSSINGNVAAAPPVPHPCAVLKRGLTETEVFLNNKDPPIPIHRPITRKFAAQLANKHQPPVPEVDKKPLQSAVTRKEFSDHHTTIEEDDSMGESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVTDIDSRDKSDQLAVVEYIDDLYAYYRKSEVSGCVSPNYMAQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVHSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYSRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTLNGFKEWSKTSEWHTGYSQEQLLECSKLMVGFHKKAGTGKLTGVHRKYCTSKFGYAARSEPAGFLLEERL* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26118950 26122448 - CsaV3_4G037240.1 Csa04g02698 528308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02698 440 Pfam Cyclin, C-terminal domain 315 429 IPR004367 -
Csa04g02698 440 CDD CYCLIN 313 400 IPR013763 -
Csa04g02698 440 MobiDBLite consensus disorder prediction 110 130 - -
Csa04g02698 440 SUPERFAMILY Cyclin-like 314 431 IPR036915 -
Csa04g02698 440 CDD CYCLIN 216 304 IPR013763 -
Csa04g02698 440 SMART cyclin_7 222 306 IPR013763 -
Csa04g02698 440 SMART cyclin_7 319 401 IPR013763 -
Csa04g02698 440 Pfam Cyclin, N-terminal domain 187 313 IPR006671 -
Csa04g02698 440 PANTHER CYCLIN-B2-3-RELATED 27 433 - -
Csa04g02698 440 ProSitePatterns Cyclins signature. 217 248 IPR006671 -
Csa04g02698 440 SUPERFAMILY Cyclin-like 176 312 IPR036915 -
Csa04g02698 440 Gene3D - 187 426 - -
Csa04g02698 440 PANTHER CYCLINS 27 433 IPR039361 -
Csa04g02698 440 Gene3D - 201 313 - -
Csa04g02698 440 MobiDBLite consensus disorder prediction 98 132 - -
Csa04g02698 440 SMART Cyclin_C_2 315 432 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02698 Csa-Chr4:26118950 Csa06g02128 Csa-Chr6:19014362 2.12E-59 dispersed
Csa02g02077 Csa-Chr2:18958082 Csa04g02698 Csa-Chr4:26118950 4.26E-07 transposed
Csa04g01909 Csa-Chr4:18838613 Csa04g02698 Csa-Chr4:26118950 2.85E-86 transposed
Csa06g02485 Csa-Chr6:22162575 Csa04g02698 Csa-Chr4:26118950 2.14E-88 transposed
Csa07g01213 Csa-Chr7:11916314 Csa04g02698 Csa-Chr4:26118950 4.65E-76 transposed
Csa04g02698 Csa-Chr4:26118950 Csa06g03395 Csa-Chr6:28148278 4.58E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02698 K21777 - csv:101223199 846.654