Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02704 | ATGAGCTGTTTTTCTTGCATTCGTACTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAACGGGAGTGGGAGGGGGAAGTCGTATTCAAATGAAACTGGAAAAGGGAAGGAATCACAAAACAGAGGTGGAAACAACCGGAAATGTGGAGCTGCGCGAAGCTTCCCGTTTCGCGAATTGGCGACTGCCACAAGAGGTTTCAAAGAAGTGAACTTGATTGGTGAAGGCGGTTTTGGAAGAGTTTACAAAGGCCGACTAGAATCAGGCCAGATTGTTGCAATTAAACAACTCAATCATGATGGTCTTCAAGGATATCAGGAATTCATCGTTGAAGTTCTCATGTTAAGTTTATTGCATCACAGTAATCTTGTCACATTGATTGGTTATTGTACTGATGGGGATCAAAGACTGTTGGTCTACGAGTACATGTCGATGGGAAGCTTGGAAAATCATCTTTTTGGTTTGTTCCCCAAACGATCACCATTGAGCTGGAACACTCGAATCAAGATTGCACTTGGTGCTGCACAGGGCCTCGAGTATCTTCACTGCACAGCCAATCCGCCAGTCATTTACCGTGACTTGAAATCTGCAAATATTTTACTGGATGATGACTTCAATCCAAAGCTCTCTGATTTTGGACTGGCCAAGTTAGGTCCAGTTGGTGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTATGGCTATTGTGCTCCGGAGTATGCCATGAGTGGGAAACTGACCCTTAAATCTGATATCTATTGCTTTGGTGTAGTTCTCTTGGAGATAATTACAGGCAGGAAAGCTATAGACACCACCAAGAAACCTGGAGAGCAAAATCTTGTTGCTTGGTCTCGCCCTTTTTTAAAAGACCGGAGGAAGTTTGTTCAATTAGTAGACCCACTGCTGGAAGGGCGCTATCCACTTCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAATGTTCCGGCCAATTATCAGTGATATTGTTGTAGCCCTTGAGTACTTAGCTTCTCAGAGTCACGCATCAGAACAACCGAGGGAAGGGGTAGGTAGTCCCTCCAAACTATCTCCTCAAGGGGACAGGAGTGCCCATGTTCAAGATTCAAGATGCGGAAAGAGTTCAACATCCAAGTAA | 1158 | 44.99 | MSCFSCIRTRCKDASKVEIDNGSGRGKSYSNETGKGKESQNRGGNNRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLESGQIVAIKQLNHDGLQGYQEFIVEVLMLSLLHHSNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLFPKRSPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDTTKKPGEQNLVAWSRPFLKDRRKFVQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPMFRPIISDIVVALEYLASQSHASEQPREGVGSPSKLSPQGDRSAHVQDSRCGKSSTSK* | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26173294 | 26177620 | - | CsaV3_4G037300.1 | Csa04g02704 | 528314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02704 | 385 | PANTHER | OS07G0668900 PROTEIN | 23 | 370 | - | - | |
Csa04g02704 | 385 | PANTHER | OS07G0668900 PROTEIN | 23 | 370 | - | - | |
Csa04g02704 | 385 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 189 | 201 | IPR008271 | GO:0004672|GO:0006468 | |
Csa04g02704 | 385 | SMART | serkin_6 | 67 | 343 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g02704 | 385 | MobiDBLite | consensus disorder prediction | 24 | 47 | - | - | |
Csa04g02704 | 385 | ProSitePatterns | Protein kinases ATP-binding region signature. | 73 | 95 | IPR017441 | GO:0005524 | |
Csa04g02704 | 385 | SUPERFAMILY | Protein kinase-like (PK-like) | 50 | 341 | IPR011009 | - | |
Csa04g02704 | 385 | Gene3D | Phosphorylase Kinase; domain 1 | 37 | 142 | - | - | |
Csa04g02704 | 385 | MobiDBLite | consensus disorder prediction | 22 | 50 | - | - | |
Csa04g02704 | 385 | Pfam | Protein kinase domain | 67 | 336 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g02704 | 385 | Gene3D | Transferase(Phosphotransferase) domain 1 | 143 | 358 | - | - | |
Csa04g02704 | 385 | CDD | STKc_IRAK | 73 | 341 | - | - | |
Csa04g02704 | 385 | ProSiteProfiles | Protein kinase domain profile. | 67 | 343 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa04g02704 | 385 | MobiDBLite | consensus disorder prediction | 348 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02704 | Csa-Chr4:26173294 | Csa06g01959 | Csa-Chr6:17687348 | 0 | dispersed | |
Csa04g02704 | Csa-Chr4:26173294 | Csa05g00641 | Csa-Chr5:4259160 | 1.32E-163 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78202 | PF00069 | Pkinase | 2.30E-45 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02704 | - | - | csv:101203407 | 781.941 |