Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02704 ATGAGCTGTTTTTCTTGCATTCGTACTCGTTGTAAAGACGCCAGCAAGGTCGAAATTGACAACGGGAGTGGGAGGGGGAAGTCGTATTCAAATGAAACTGGAAAAGGGAAGGAATCACAAAACAGAGGTGGAAACAACCGGAAATGTGGAGCTGCGCGAAGCTTCCCGTTTCGCGAATTGGCGACTGCCACAAGAGGTTTCAAAGAAGTGAACTTGATTGGTGAAGGCGGTTTTGGAAGAGTTTACAAAGGCCGACTAGAATCAGGCCAGATTGTTGCAATTAAACAACTCAATCATGATGGTCTTCAAGGATATCAGGAATTCATCGTTGAAGTTCTCATGTTAAGTTTATTGCATCACAGTAATCTTGTCACATTGATTGGTTATTGTACTGATGGGGATCAAAGACTGTTGGTCTACGAGTACATGTCGATGGGAAGCTTGGAAAATCATCTTTTTGGTTTGTTCCCCAAACGATCACCATTGAGCTGGAACACTCGAATCAAGATTGCACTTGGTGCTGCACAGGGCCTCGAGTATCTTCACTGCACAGCCAATCCGCCAGTCATTTACCGTGACTTGAAATCTGCAAATATTTTACTGGATGATGACTTCAATCCAAAGCTCTCTGATTTTGGACTGGCCAAGTTAGGTCCAGTTGGTGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTATGGCTATTGTGCTCCGGAGTATGCCATGAGTGGGAAACTGACCCTTAAATCTGATATCTATTGCTTTGGTGTAGTTCTCTTGGAGATAATTACAGGCAGGAAAGCTATAGACACCACCAAGAAACCTGGAGAGCAAAATCTTGTTGCTTGGTCTCGCCCTTTTTTAAAAGACCGGAGGAAGTTTGTTCAATTAGTAGACCCACTGCTGGAAGGGCGCTATCCACTTCGTTGTCTACACCATGCAATCGCAATTGCTGCAATGTGTCTCCAGGAGCAGCCAATGTTCCGGCCAATTATCAGTGATATTGTTGTAGCCCTTGAGTACTTAGCTTCTCAGAGTCACGCATCAGAACAACCGAGGGAAGGGGTAGGTAGTCCCTCCAAACTATCTCCTCAAGGGGACAGGAGTGCCCATGTTCAAGATTCAAGATGCGGAAAGAGTTCAACATCCAAGTAA 1158 44.99 MSCFSCIRTRCKDASKVEIDNGSGRGKSYSNETGKGKESQNRGGNNRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLESGQIVAIKQLNHDGLQGYQEFIVEVLMLSLLHHSNLVTLIGYCTDGDQRLLVYEYMSMGSLENHLFGLFPKRSPLSWNTRIKIALGAAQGLEYLHCTANPPVIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDTTKKPGEQNLVAWSRPFLKDRRKFVQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPMFRPIISDIVVALEYLASQSHASEQPREGVGSPSKLSPQGDRSAHVQDSRCGKSSTSK* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26173294 26177620 - CsaV3_4G037300.1 Csa04g02704 528314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02704 385 PANTHER OS07G0668900 PROTEIN 23 370 - -
Csa04g02704 385 PANTHER OS07G0668900 PROTEIN 23 370 - -
Csa04g02704 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Csa04g02704 385 SMART serkin_6 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02704 385 MobiDBLite consensus disorder prediction 24 47 - -
Csa04g02704 385 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Csa04g02704 385 SUPERFAMILY Protein kinase-like (PK-like) 50 341 IPR011009 -
Csa04g02704 385 Gene3D Phosphorylase Kinase; domain 1 37 142 - -
Csa04g02704 385 MobiDBLite consensus disorder prediction 22 50 - -
Csa04g02704 385 Pfam Protein kinase domain 67 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02704 385 Gene3D Transferase(Phosphotransferase) domain 1 143 358 - -
Csa04g02704 385 CDD STKc_IRAK 73 341 - -
Csa04g02704 385 ProSiteProfiles Protein kinase domain profile. 67 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02704 385 MobiDBLite consensus disorder prediction 348 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02704 Csa-Chr4:26173294 Csa06g01959 Csa-Chr6:17687348 0 dispersed
Csa04g02704 Csa-Chr4:26173294 Csa05g00641 Csa-Chr5:4259160 1.32E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78202 PF00069 Pkinase 2.30E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02704 - - csv:101203407 781.941