Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02708 ATGGGCGAGGTTTCTAAATCCACCATGAAGAAGAAGAAGAAAAAGGGTCGCCCTTCTCTTTTAGATCTCCAAAAGCGCTTCCTCAAACAGCAAAAGTTGCAGGAGGAACAGCATCAAGAACCGTCTGACGCTTTCGACTTTTCCTCCAACCCTAGGAACCCACCTTCTTGTCGGAATCTCAATGTTCACTCCGGAACAGAGCAAGTCCCCATCACTGCCGCTGCCGACGACGACGACGAGCGCATTGAGAAGAAGCATAAGCCCTTACTCGGTTTAACGTCTCGTCAAAACTGTCCAACATTGTCCGGTTATTCTTTGCGTAAATTGGCCTCCTATGGCGAAGAGTCCGAGACAGCCCTCAAGCGTCGCAGAACCGGCGCCGCCCAGTTTGGATCTTCTCAAGTGAGAGAAGATAAAGCTTTGAAAGCGACAGACCCTGCACATGGGTCGCAGGTGGAGTCTGGTCCCACGACAACTTTGCCAGACAAAAAGTTGTTGATTTTCATCCTTGATAGGCTTCAAAAAAAAGACACCCATGGAGTATTTTCCGAACCCGTGGATCCAAACGATCTTCCCGATTACCATGTCATTATTCAAAATCCTATGGATTTTGGGACTGTGAGAACGAAATTAGATGAAGGAGCTTACGCAAATTTGGAACAGTTTGAAGAAGACATTTTTTTGATATGTTCGAATGCAATGAAGTATAATGCTTCTGATACTGTTTTCTTCCGTCAGGCACGATCAATACAAGAACTTGCAAAGAAGGATTTTGAGAATTTGAGGCGAGAGAGCAGCGATGAAAGTGAACCAGAACAGAAAGTTGTGAGGAGAGGTAGGCCTCCAGGAAAGAGCCTGAAGAAATCATTAGGTATTGGTAACGCTATTGACAGTAATGGAGCAGAGTTCTGCTCAGGTGCTACTCTTGCTTCTGGATGTGATGATTCCTACAATGTCAATGGTTACAATTTGAGAAGAGCTCGTTCCACCTTCAGACCCCTGCCTGCAGATCCTCTAGCAAGAACATCTACAGCACAAGCTCAACATGGCGAAACTTTGGCCAGCTGGTTGCCTGAATGGAAAATTGAGTTTCCAGCTTCTGTTTTAAAGGGTGTTCTTAAAAGTGGAAAGAATGATAATATGGCTGTGAATGAGAATAGACGTGATACCTATAATCGTTCCACGTCATGTGGGAATTGGCCATCTGTCTTTGGTGACCTTGATGGAGACTTGAAGCAACTAATTACTGTGGGTTTGCATGCCGAGCATGGTTATGCAAGAAGCTTAGCTCTCTTTGCAGCCGATCTTGGTCCTGCAGTTTGGAATATTGCTTTAAAGAAAATCAAAGGTATTAGTCGGGAGCTGGGGCGAGTATTAATACAAGAAATTGAAATGCTACAGCAGCATCATTTGTTGCCTCTGGATGGAGGCTCATCCGACATGAAAACAGTGGCAGAAAGCACGGCCAACATTGGTGTTTCAAATAATTTTTTGAAACTCGGCGAAGATGCTGATAATGAAATTGATAGAGTGAGAAATGCTGAAAGCAAGACAGTGTTGCTAGACAGAAGTAGAGGTTTAATAGGATCAACAACTTGTATACCGAATGAACAGAACATACTAGTTCCTTCAAACATCCACCCCACAAATGGTAATCTTTTCCCCCATTTTTCACAAGAAATGAAAATGGTAAGACTTGATTCTATTCTTGGTGGGACGTCTTGTTCAGAATACTCTACATGCCCAGCTCCTCTCAACAATGCTTCTTTCCAAGTCCCTTCCAGTTCAGATAATACGGATTTGTTAAACCAAACTGGAATGCCAAAACTTGCAGAAGAAGATGCCTCTCAGTCACACGCTCCGTGGCATTCACCAGCCCGCGCCTGCTTTCAGGACACAGTCGATGCACAACAAGACAAGCGTAGTGAAAAGGCACATTGGCAAGAATTATCAACACGTCCTGTGCTAGATTCAATCGCCTTCGATCCTGACCTTAATTTTGGATTAGGCTTATCTGCTGCACCCAATTCTAATCTGCAGATTCTTTCTCAAATTCAACCCGATTTAGTATTGCAGCTGTGA 2082 44.14 MGEVSKSTMKKKKKKGRPSLLDLQKRFLKQQKLQEEQHQEPSDAFDFSSNPRNPPSCRNLNVHSGTEQVPITAAADDDDERIEKKHKPLLGLTSRQNCPTLSGYSLRKLASYGEESETALKRRRTGAAQFGSSQVREDKALKATDPAHGSQVESGPTTTLPDKKLLIFILDRLQKKDTHGVFSEPVDPNDLPDYHVIIQNPMDFGTVRTKLDEGAYANLEQFEEDIFLICSNAMKYNASDTVFFRQARSIQELAKKDFENLRRESSDESEPEQKVVRRGRPPGKSLKKSLGIGNAIDSNGAEFCSGATLASGCDDSYNVNGYNLRRARSTFRPLPADPLARTSTAQAQHGETLASWLPEWKIEFPASVLKGVLKSGKNDNMAVNENRRDTYNRSTSCGNWPSVFGDLDGDLKQLITVGLHAEHGYARSLALFAADLGPAVWNIALKKIKGISRELGRVLIQEIEMLQQHHLLPLDGGSSDMKTVAESTANIGVSNNFLKLGEDADNEIDRVRNAESKTVLLDRSRGLIGSTTCIPNEQNILVPSNIHPTNGNLFPHFSQEMKMVRLDSILGGTSCSEYSTCPAPLNNASFQVPSSSDNTDLLNQTGMPKLAEEDASQSHAPWHSPARACFQDTVDAQQDKRSEKAHWQELSTRPVLDSIAFDPDLNFGLGLSAAPNSNLQILSQIQPDLVLQL* 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26182005 26186938 - CsaV3_4G037340.1 Csa04g02708 528318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02708 693 MobiDBLite consensus disorder prediction 1 67 - -
Csa04g02708 693 MobiDBLite consensus disorder prediction 123 158 - -
Csa04g02708 693 SUPERFAMILY Bromodomain 153 264 IPR036427 GO:0005515
Csa04g02708 693 PRINTS Bromodomain signature 191 207 IPR001487 GO:0005515
Csa04g02708 693 PRINTS Bromodomain signature 207 225 IPR001487 GO:0005515
Csa04g02708 693 PRINTS Bromodomain signature 225 244 IPR001487 GO:0005515
Csa04g02708 693 ProSitePatterns Bromodomain signature. 179 236 IPR018359 -
Csa04g02708 693 CDD Bromodomain 162 258 - -
Csa04g02708 693 Pfam Bromodomain 169 248 IPR001487 GO:0005515
Csa04g02708 693 MobiDBLite consensus disorder prediction 28 42 - -
Csa04g02708 693 MobiDBLite consensus disorder prediction 43 67 - -
Csa04g02708 693 PANTHER BROMODOMAIN-CONTAINING PROTEIN-RELATED 8 449 - -
Csa04g02708 693 ProSiteProfiles Bromodomain profile. 174 244 IPR001487 GO:0005515
Csa04g02708 693 Gene3D - 158 280 IPR036427 GO:0005515
Csa04g02708 693 MobiDBLite consensus disorder prediction 260 279 - -
Csa04g02708 693 SMART bromo_6 155 263 IPR001487 GO:0005515
Csa04g02708 693 MobiDBLite consensus disorder prediction 260 291 - -
Csa04g02708 693 PANTHER BROMODOMAIN CONTAINING PROTEIN 8 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02708 K22184 BRD9; bromodomain-containing protein 9 - csv:101217603 1351.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02708 Csa-Chr4:26182005 Csa07g01101 Csa-Chr7:10640198 6.61E-64 dispersed
Csa04g02708 Csa-Chr4:26182005 Csa07g00186 Csa-Chr7:1513850 3.45E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02708 Csa_Chr04 FPKM 1.889937 1.393819 3.891559 5.812188 1.207733 0.82042 0.524329 3.850495 3.702064 4.206612