Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02711 ATGGAGTGGCAGAATCAGCAGCAACAGAATCAAACAGAGCAATTGCAAATGCAGGTGGAGCAATTGAGCAACGCCGATGGAGTTGGTGGTCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAGCAGCTCGTGGAGATGCACAAGGCAATCACCGCCCAACAGGACCTTGCGGGAATAAGCGGGACCCTTGCTCTTTGTTTGTTTCATCATCAGAACCATCTACTTATCTTTCCTGTTTCTCAATGCCTGGAGAAATGGACTCCTTTGGAAAATGAATTTTGCTCCTTAAACAGCTTTTATGCTTACTGGTTTCCAGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACACCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGGACCCCTAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTCTATAATTGGTTTCAAAATAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAACTCATTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAGCCTTCCAAACTTATGAACATTTGGTTCCGAAGTCCGGCAATATGTACTCCCAGAGAACTGATTTAAGTACTGAAATACTTTCCTTTGATGCGCAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATACCAGTCAGATGACTCCAATACAAAATCATAGTATGTCACTCTGTTTTTTCAAGAGCTATACATTTGAACATTTCTTGAATTTTCTTCATCGGAAATTTCCATAA 945 42.86 MEWQNQQQQNQTEQLQMQVEQLSNADGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGISGTLALCLFHHQNHLLIFPVSQCLEKWTPLENEFCSLNSFYAYWFPGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNADSEPETEVDSPKEKKTKPEAFQTYEHLVPKSGNMYSQRTDLSTEILSFDAQSNKGEPMFQSFGSGHTSQMTPIQNHSMSLCFFKSYTFEHFLNFLHRKFP* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26192300 26193473 + CsaV3_4G037370.1 Csa04g02711 528321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02711 314 PANTHER WUSCHEL-RELATED HOMEOBOX 13 120 281 IPR044559 GO:0003700
Csa04g02711 314 PANTHER - 1 75 - -
Csa04g02711 314 PANTHER - 120 281 - -
Csa04g02711 314 Coils Coil 5 25 - -
Csa04g02711 314 SMART HOX_1 142 209 IPR001356 GO:0003677
Csa04g02711 314 CDD homeodomain 144 206 IPR001356 GO:0003677
Csa04g02711 314 MobiDBLite consensus disorder prediction 202 233 - -
Csa04g02711 314 SUPERFAMILY Homeodomain-like 143 206 IPR009057 -
Csa04g02711 314 MobiDBLite consensus disorder prediction 219 233 - -
Csa04g02711 314 ProSiteProfiles 'Homeobox' domain profile. 140 205 IPR001356 GO:0003677
Csa04g02711 314 Pfam Homeodomain 144 204 IPR001356 GO:0003677
Csa04g02711 314 Gene3D - 146 210 - -
Csa04g02711 314 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 75 IPR044559 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02711 - - - csv:101204139 447.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00033 Csa-Chr3:382154 Csa04g02711 Csa-Chr4:26192300 9.40E-67 dispersed
Csa04g02711 Csa-Chr4:26192300 Csa06g03668 Csa-Chr6:29480418 1.38E-14 dispersed
Csa04g02711 Csa-Chr4:26192300 Csa01g00712 Csa-Chr1:4514227 2.23E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31649 PF00046 Homeodomain 1.10E-17 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02711 Csa_Chr04 FPKM 1.475316 1.545725 4.024844 5.155963 11.259727 10.3792 10.775884 7.313275 8.053539 7.780269