Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02713 ATGAGTTCGAATAACCCCACTCGAAAAGTTCTGTGTAATACTGCCAAAATGGTCTATGCAAAAGGGGGGAGGAAGCCTAAATCCAAGCCCAACCGAACTTATCGGCTTAAGAAGAATGTGTACCGGATTGGTGGCGTCCAAGTGGAATTTCCATTCCGACCATACGGTTCGCAGCTGGAGTTCATGGACAGAGTTATATCCACCCTTGATCGAGCTCAGCGAGAGGGCCATTGCCACGCGTTGCTGGAATCTCCGACTGGAACCGGGAAGTCACTTTCACTTCTCTGCTCTAGTCTTGCTTGGCAGAAGAATTTCAAGATAAAGAATCAGGATGCTAATTTCTGTCACACGAGGCCTGCTCCAGAGGCTGCCACGAATCCTCTCGGTTTTGGCGGTGGATTTATTCCCGAAGTGCAGCCGTCAAGTAAGTGTGCATGTCCTTACCCTGTTCATCCGAACATATCGAACGCACGAATTCGATTAGGTGGTCAGGGTTCTCTAGTGTCTACAGATACAGAGTCATCTCTTCCAGGGCCAAACAACAAAATTCGGAAGAAAAAAACAGCCCCGACCATTTACTACTCCTCGAGGACACATTCACAGATATCACAGGTGATCCGTGAGTATAGGAAAACTGCCTATCGAGTGCCAATGGCAGTGTTGTTAATTCATTTGATATTCTCCTTTCCAATAAACGGAAACAAGGTTAAATGTCATCCAACTCTTCAGAAAGGAGGACGTCATGAGGTTCATGACATTCAAGATTTGGTGAAAACTGGAGAAGCTGTAAAAGGTTGTTCATATTATGCAGCTCGCTCTATGGCATACAACGCACAGCTGGTGTTTTGCCCATATAGCTATATTATCAATCCAGTTATACGAAGAGCAATTGGTGTAGATGTTAAGGATGCGATTGTGATCTTTGATGAAGCCCACAATATAGAGGATATTGCACGTCATGGTGGTAGTGTCGATATTGAAGAGGATACTTTAAATAAATTGCAGATGGAGTTAGAGCAACTATGTTTTATTAATTATTTGGTTTACCAGCCTCTGTATGAAATGACACAGGATCTCAAAAGTTGGATTGACCGAAGGAAGACCACATTGCAGGAGCGCGAGTTTCAGCATTATGTCACCTGTTGGACTGGCAATCATGCTCAAAGGGAGCTCCAAGAAGCTAATATAACTCAACAATGCTTCCCCATTTTACTCGAATGTGCAACAAAGGCTACTAAAGCAGCTTCATATACGGTGTCAGATGATGCACATTTGAGTGGTCTGTCAGTGTTAACACTGGAAGGATTATTCTCTTCTTTGACATATTTCTTCTCAAGAAATGGTTGCCACATGTCTGACTACCAGCTTGCATTACAACGCTACACTAAAAGAGATCCTGAAAAAGCTTGTGCTAAATGGACGGTTACTTTAAGTTTGTGGTGCTTGAATCCAGCTGTTGTATTTAGAGACATTGGTGATCTTTCCTTATCGGTTATTTTGACATCTGGGACCCTGTCACCGTTGAATTCCTTTTCATCTGAACTAGGAGTTCGGTTTGGAACTTCACTGGAAGCTCCTCACGTGATTGATGTGGAATCTCAGGTGTGGCCAGCTATTATATCAATTGGTCCAGGAAACTATCCGCTGAATGCAAGTTATAAAACAGCTGATGGATATGCATTCCAGGATGCTCTAGGAAAATCATTAGAGGAGATATTTTTCATCGCTCCTGGTGGCTGTCTTGTGTTCTTCCCCAGTTATAAGCTGATGGAGAAACTCCGAAATCGTTGGTCTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCCCTTTTTGTTGAGCCATGTGGAGGAGCTCAAGAAGATTTTGATTCCATATTGAAAGGTTATTATGATACTATACGTCTTGGTGATAACTTTGCAGTTGGGAAGAAGGTCAAACCCGATGAATCGTATGTTTTTGGCTGTGAAAATCCCAAGGGTGCAGCACTCCTTGCAGTTTTTCGAGGAAAGGTTTCAGAAGGAATAGACTTTTCTGATGATAATGCTAGAGTGGTTATAATAGTTGGTATTCCATTTCCAGATATAAATGGTATTCAAGTTGCATTGAAGAAAAAGTTCAATGACAAATATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAAGCCTTTCGAGCTCTAAATCAAGCTGCAGGACGATGTATTCGACACAAATTTGACTATGGTGCCATTGTGCTATTAGATGAGCGTTTCCAGGAAGAGAGGAACAGGACTTACATTTCAAAGTGGCTAAGAAAATCCATTAAACAATTTGATAACTTTGAACAGTCTATGGAGGAGCTGAAATCCTTTTTCAGCCACATTAAGGAGCGCATTAGCAACAAGACAGAAAGTGAGTTGCCAAAATCTGTGAATGAGGAGCATATTACTTCTACCTGCCCAAGTAGTTGTAGAAGAACGAAGATAGAGGAATTTGACAAGTTTAATTATCGTGGGCAGAAGGCTAGTACTAAAATAATGAAGTACAATACCTGTTTTTTTCAATCGAAATCTCTAGTTGGTATTGACGACAAGCTTTATTTCAGGGTCACCAAGATGTGA 2619 41.73 MSSNNPTRKVLCNTAKMVYAKGGRKPKSKPNRTYRLKKNVYRIGGVQVEFPFRPYGSQLEFMDRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQKNFKIKNQDANFCHTRPAPEAATNPLGFGGGFIPEVQPSSKCACPYPVHPNISNARIRLGGQGSLVSTDTESSLPGPNNKIRKKKTAPTIYYSSRTHSQISQVIREYRKTAYRVPMAVLLIHLIFSFPINGNKVKCHPTLQKGGRHEVHDIQDLVKTGEAVKGCSYYAARSMAYNAQLVFCPYSYIINPVIRRAIGVDVKDAIVIFDEAHNIEDIARHGGSVDIEEDTLNKLQMELEQLCFINYLVYQPLYEMTQDLKSWIDRRKTTLQEREFQHYVTCWTGNHAQRELQEANITQQCFPILLECATKATKAASYTVSDDAHLSGLSVLTLEGLFSSLTYFFSRNGCHMSDYQLALQRYTKRDPEKACAKWTVTLSLWCLNPAVVFRDIGDLSLSVILTSGTLSPLNSFSSELGVRFGTSLEAPHVIDVESQVWPAIISIGPGNYPLNASYKTADGYAFQDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLRNRWSETGQWSRLNARKSLFVEPCGGAQEDFDSILKGYYDTIRLGDNFAVGKKVKPDESYVFGCENPKGAALLAVFRGKVSEGIDFSDDNARVVIIVGIPFPDINGIQVALKKKFNDKYKMSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIVLLDERFQEERNRTYISKWLRKSIKQFDNFEQSMEELKSFFSHIKERISNKTESELPKSVNEEHITSTCPSSCRRTKIEEFDKFNYRGQKASTKIMKYNTCFFQSKSLVGIDDKLYFRVTKM* 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26206185 26212926 - CsaV3_4G037390.1 Csa04g02713 528323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02713 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 753 IPR027417 -
Csa04g02713 872 Pfam DEAD_2 243 331 IPR010614 GO:0003677|GO:0003678|GO:0005524
Csa04g02713 872 Pfam Helicase C-terminal domain 571 772 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Csa04g02713 872 PANTHER FANCONI ANEMIA GROUP J PROTEIN 35 827 - -
Csa04g02713 872 CDD SF2_C_XPD 533 757 - -
Csa04g02713 872 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 35 827 IPR045028 -
Csa04g02713 872 Gene3D - 546 789 IPR027417 -
Csa04g02713 872 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 44 359 IPR014013 GO:0005524
Csa04g02713 872 SMART deadxpd 46 346 IPR006554 GO:0003678|GO:0016818
Csa04g02713 872 Gene3D - 53 225 IPR027417 -
Csa04g02713 872 SMART Cxpdneu3 587 759 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Csa04g02713 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 319 IPR027417 -
Csa04g02713 872 Gene3D - 229 366 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02713 K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein [EC:5.6.2.3] - csv:101218075 1607.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02713 Csa-Chr4:26206185 Csa07g02228 Csa-Chr7:20931490 2.57E-102 dispersed
Csa04g02712 Csa-Chr4:26194665 Csa04g02713 Csa-Chr4:26206185 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02713 Csa_Chr04 FPKM 102.7537 109.313232 43.141476 43.816204 53.989754 46.490097 54.167408 26.021048 26.784809 28.886211