Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02714 ATGGCATTCGGCGCTTCCCGGCGTCTTATTCCCTATCAACTCAGAGCCTGCTTTTTGGGGCTTATTGCCAGTGGCAGGTATCACTATCCCTTAATCCACTCGCCGTCGCCGGCTTTATCATACTTGTTTTCAACCCTAGATGAACCATCAAATCTATTTGATGATGGTCTTTCGGGTAATGGGGATCGAAATCAACGCTGCATAGACGAGCGATTCGTTATCAGTGAACTTTCTGATCTTCTACTAGTTAATCCTTATGGTTCGGTTTATAACACTCTCAAAGAGAATTCCATTGAGAAACAGATGCCAGTTAGGGCAGTTGATGGATTCTTGCTTCCAGAAGAGAAATTGCGAGGTGTTTTCCTTCAAAAACTGAATGGTAAAACCGCAATTGAGCATGCATTAGCTAATACTGATGTGATTTTGAGTCAAGATGTTGTCAGCAAAGTATTAAACACTGGGAGTTTAGGTAGCGAAGCAATGGTTACCTTCTTTTATTGGGCTATTAAACAGCCGTCGATACCTAAAGATGCTTCTAGTTACAACATAATTCTTAAAGCTTTAGGTAGAAGGGGTTTTTTTGACTCCATGATGGATGTTTTGTACAACATGACACGGGAGGGAGTGGAGGCTACATTGGAAATGGTCTCCATTGTAGTAGACAGTCTGGTCAAGGGTCACCAAGTTTCTAAGGCACTTCAATTTTTCAGAAACTTGAAAGAAATTGGGTTGAAATGTGATACTGAAACCTTGAACATTCTTCTACAATGCATGTGTCGACGATCCCACGTTGGTGCTGCAAACTCCTTCTTTAATTTAACCAAGGGGAATATCCCTTTCAATGTCATGACATATAACATTGTAATTGGTGGATGGTCAAGATACGGTAGGCACGGTGAAGTTGAGCAAATGTTGAAAGCAATGGAACTTGATGGATTTTCTCCAGACTGTCTGACCCACACCTATCTTATTGAGTGTCTTGGCAGAGCTAATCAGATTGATGATGCTGTCAAGATTTTTGATAAAATGGATGAAAACGGCTGTACACCAGATGTTGATGCTTACAATGCAATGATCTCCAACTTTATATGTATAGGTGATTTTGATCAATGCCTGACCTATTACGAGCGTATGTTGAGCAACAGATGTGAACCTGACATGAACACCTATTCGAATTTGATTACTGGCTTTCTCAAGGCCAAGAAAGTAGCCGATGCACTAGAAATGTTTGATGAAATGGTGGCAAGAATAATTCCCACTACGGGGGCAATAACATCCTTTATTCAACTTAGCTGTAGTTATGGTCCTCCACACGCAGCTATGTTAATCTACAAGAAAGCAAGAAAAGTTGGATGTAGGATATCCAAGAATGCATACAAATTGTTGCTAATGCGGCTTTCTTTGTTTGGTAAATTTGGCATGCTATTAAATATATGGAATGAGATGCAAGAAAGTGGTTATGATCCTGATGTGGAGACTTATGAGCATGCCATTGACTGTCTCTGTAAAACAGGGCAGCTTGAAAATGCTGTACTCGTCATGGAGGAATGTTTACGTCAGGGTTTCTTCCCAAGTAGGCGAACACGTAGTAAGCTTAATAACAAACTATTGGCCTGTAATAGGACAGAGATGGCATATAAACTCTGGTTGAAAATCAAAGTTGCTCGTCATCAGGAAAATCTGCAAAGATGTTGGCGTGCCAAGGGATGGCATTATTGA 1719 40.72 MAFGASRRLIPYQLRACFLGLIASGRYHYPLIHSPSPALSYLFSTLDEPSNLFDDGLSGNGDRNQRCIDERFVISELSDLLLVNPYGSVYNTLKENSIEKQMPVRAVDGFLLPEEKLRGVFLQKLNGKTAIEHALANTDVILSQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIPKDASSYNIILKALGRRGFFDSMMDVLYNMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIGLKCDTETLNILLQCMCRRSHVGAANSFFNLTKGNIPFNVMTYNIVIGGWSRYGRHGEVEQMLKAMELDGFSPDCLTHTYLIECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQCLTYYERMLSNRCEPDMNTYSNLITGFLKAKKVADALEMFDEMVARIIPTTGAITSFIQLSCSYGPPHAAMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQESGYDPDVETYEHAIDCLCKTGQLENAVLVMEECLRQGFFPSRRTRSKLNNKLLACNRTEMAYKLWLKIKVARHQENLQRCWRAKGWHY* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26214951 26218353 + CsaV3_4G037400.1 Csa04g02714 528324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02714 572 SUPERFAMILY TPR-like 317 414 IPR011990 GO:0005515
Csa04g02714 572 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 18 572 - -
Csa04g02714 572 PANTHER OS02G0304800 PROTEIN 18 572 - -
Csa04g02714 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Csa04g02714 572 Gene3D Tetratricopeptide repeat domain 128 266 IPR011990 GO:0005515
Csa04g02714 572 Pfam PPR repeat 180 209 IPR002885 -
Csa04g02714 572 Pfam PPR repeat 493 522 IPR002885 -
Csa04g02714 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Csa04g02714 572 Pfam PPR repeat 382 414 IPR002885 -
Csa04g02714 572 TIGRFAM PPR: pentatricopeptide repeat domain 354 386 IPR002885 -
Csa04g02714 572 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Csa04g02714 572 TIGRFAM PPR: pentatricopeptide repeat domain 389 416 IPR002885 -
Csa04g02714 572 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Csa04g02714 572 TIGRFAM PPR: pentatricopeptide repeat domain 180 211 IPR002885 -
Csa04g02714 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Csa04g02714 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Csa04g02714 572 Pfam Pentatricopeptide repeat domain 305 361 IPR002885 -
Csa04g02714 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Csa04g02714 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Csa04g02714 572 Gene3D Tetratricopeptide repeat domain 417 571 IPR011990 GO:0005515
Csa04g02714 572 Gene3D Tetratricopeptide repeat domain 267 416 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02714 - - - csv:101204379 1162.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02714 Csa-Chr4:26214951 Csa02g00504 Csa-Chr2:3546393 3.36E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g80 . . . . . . . . . . . . . . . Cpe06g00015 . . . . . . . . . . . . . . . Cone4ag2026 . . . Lsi04g01817 Csa04g02714 . . . . . . . . . . . . Cmo09g00047 . . . Car09g00037 . . Bhi09g02856 . . . . . . . . . . . . . . . Chy07g00403 Cme07g00045
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006076 1 11 1 1 1 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02714 Csa_Chr04 FPKM 19.210257 10.416491 9.818979 7.621166 11.94165 6.455718 13.86655 16.308496 17.140921 20.747324