Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02715 ATGGATCAGTTCGACTTATTCTTTAGGAGAGCCGATTTGGATGGTGATGGGAGGATTAGTGGAGCTGAAGCTGTTTCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTTGCGCAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTTCTTGGTAGACCGGAATTTTATAATGCTCTCAGACTTGTGACTGTTGCTCAAAGTAAGCGAGAGCTAACACCTGAAATTGTAAAGGCAGCACTATATGGTCCTGCTGCTGCGAAAATCCCCCCACCAAAGATTGATCTGCAGGCTCTATCTGCCCCTCAATCAACTTCAGTGCCTGCTGCATCTCCTCCACAGATGAGTATACCTGCACCAACAGGATCTCAAAATTTTGGCTTTAGAGGACAAGGGGTTCCAAATGTGGGTGCGAACCAGCAGTATGTATCAGCCCAGCCAAACCCTTCCATGAGGTTACCTCAAGCCACACCTGGTGGTGTTGCTTCCAATATGCAACTGGTTGTTTCTTCTGAACCTTCTGGAGGAGGAAATCTACTGGGCTCAAATCTTTCAAACCCAAATGATTGGCTCAATGGAAGGCCAGGTGGGGTCCCTGCTGCTGGGCCTAGAGGAGTCAGTCCTTCCCTGCCTTCCCCAGCTACGTCGTTATCTCCAGCTTTAATGACTTCGCAGCCTATGCCTAATGATAGAGCACCAGCTGTTACTGGTAATGGATTTGCTTCTAAGTCAGCATTTGGTGCTGACATGTTTTCTGTTACTCCATCTCCACCTAGACCAGAATCTTCTGGATTCAACAATGCAGCTAATAGTAGTATTGGTCCATCAGCGATTGTTCCAGTTTCCAGTGTATCCCAACCTTTAAGTAAGTCCACATCATTGGAGTCATTGCAGAGTGCATTTGTTTCAAGACCGTTAGCTGGTTCACAGTTTCAGCTTTCTCAGTCAGCACCGGAACCTAACAAGGAGGTTCGAGCAACAGGTCCATCGCCACTTATATCTTCTGGGATCACAACTGGAGCCAGAAACTCTACTTCTGAAAATGCACAGTTTACTTGGCCAAAAATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACTGACAGAGATGGCAGAATTACCGGTGACCAGGCACGGAATCTATTTTTAAGTTGGAGGTTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAAAGAGTTTTGTTTTGCCTTATATCTAATGGAACGTTACAGGGAAGGACGGCCACTTCCAGCTGCACTTCCAAATAATGTTATGTTTGATGAAACTCTGCTGTCCATGACAGGACAATCTAACGTTGTCCATCCAAATGCAGCTTGGAGTCCACGTCCTGGATTTGGACAGCAGCAACCTCAGGTCACTGCTCGGTCAATGGCACCAACTGCAGGATTGAGACCGCCAACAAATATACCTGCTTCAAAAGCTGATGGTGCTAAACTATCCAATGAGCAGAAATCAAGGGCTCCGGTGTTGGAAGATTCATTTCTGGACCAGTCTGAGAAGGCTCAAGATGCTGCAGCATCTGAGAAAAAGGTTGGAGAAACTGCGAATGTTATTTTGGATTCGAAAGAAAAGATTGAATATTATCGCACAATGATGCAGGAACTTGTTCTTCATAAAAGCAGATGTGATAATAGATTAAATGAAATCACAGAAAGGGCATCTGCTGACAAGCGTGAGGCAGAATCTTTGGGAAAAAAATATGAGGAAAAATACAAGCAGGTGGCTGAAATAGCATCCAAGTTAACCATTGAAGAGGCAAAATTTCGTGATGTTCAAGAAAGGAAGACAGAGTTGCATCAAGCAATTATTAGAATGGAACAAGGAGGAAGTGCCGATGGTATTCTTCAGGTCCGAGCTGATAGAATACAATCTGATATTGAGGAGCTCATAAAGGCTTTAACTGAACGTTGTAAGAAACATGGATTTGATGTTAAGTCGGCAGCTATAATTGAGCTTCCAGTAGGTTGGCAACCTGGAATTCCGGATAATGCAGCTATTTGGGATGAAGAGTGGGATAAATTTGAAGATGAAGGATTTTCCAATGACCTTAACCTAGATCCAAAAGGTGTTTCTGCCTCAAAACCAAAAATGTCAGACAGTGAGAAGGATTTAGCAGATTATAACTCAACTCCTGATTCATCCTCAAATGCCAATGGCAAAACAGGGCACTCCTTCAGTAACATTAATCGTGGCCTTGAGAATGAATCTTTGTATAGCCACAGTGAAGATGGGTCAGCAAGAAGTCCGTATGGCAGCCCAGCTGCTAAGACACCTCTAGAAAGCCCTTCTCATGACTTTTCAGATGCTGGTTTTGAAAAAAGTCCAGAGGCATATGGAAGTTTCAATGACTCCGCCTGGGGCACCTTTGACAATAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAGCCAGACTCGGAAAAGCACAGAGATTTCTTTGGATCCAGTGATTTTGATACTAGCTCCGTCAGAACAGGATCCCCGAATGCAGATAGCTTCTTTCAGAGAAAAAGTCCATTTTTTGAGGATTCTGTCCCTCCCACTCCGCTCTCTAGATTCGGCAACTCTTCCCCTCGCTATAGCGATGTGGGGGATCACTACTTTGACAATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATGGCAGTTTTTCTCCTCAACGTGAGAAGTTCTCTAGGTTCGATTCGATAAGCAGTTCTCGCGATTTTGGCAATAATCAAGAGAAGTTCTCTAGGTTCGATTCAATAAGCAGTTCGCGTGATTTTGGCAATAATCAAGAGAAGTTCTCTAGGTTCGATTCAATAAGCAGTTCTCGTGATTTTGGCCATAATCAAGACAAGTTTTCAAGGTTTGATTCTATGAGTAGTAGCAGCATGGACTTCGGCCAGAATAGCCAGAGGCATGCCAGATTTGACTCCATTGGCAGCTCCAAAGATTTCGGCCATGGTACCTTCTCTTTTGATGATGCAGATCCATTTGGAACCTCTGGTCCCTTTAAAGTCTCATCGGAGAGCCACAGTCCGAAGAAAAGTTCTGACAATTGGAGAGCTTTTTAA 3153 43.96 MDQFDLFFRRADLDGDGRISGAEAVSFFQGSNLPKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRELTPEIVKAALYGPAAAKIPPPKIDLQALSAPQSTSVPAASPPQMSIPAPTGSQNFGFRGQGVPNVGANQQYVSAQPNPSMRLPQATPGGVASNMQLVVSSEPSGGGNLLGSNLSNPNDWLNGRPGGVPAAGPRGVSPSLPSPATSLSPALMTSQPMPNDRAPAVTGNGFASKSAFGADMFSVTPSPPRPESSGFNNAANSSIGPSAIVPVSSVSQPLSKSTSLESLQSAFVSRPLAGSQFQLSQSAPEPNKEVRATGPSPLISSGITTGARNSTSENAQFTWPKMKPTDVQKYTKVFMEVDTDRDGRITGDQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLKEFCFALYLMERYREGRPLPAALPNNVMFDETLLSMTGQSNVVHPNAAWSPRPGFGQQQPQVTARSMAPTAGLRPPTNIPASKADGAKLSNEQKSRAPVLEDSFLDQSEKAQDAAASEKKVGETANVILDSKEKIEYYRTMMQELVLHKSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIASKLTIEEAKFRDVQERKTELHQAIIRMEQGGSADGILQVRADRIQSDIEELIKALTERCKKHGFDVKSAAIIELPVGWQPGIPDNAAIWDEEWDKFEDEGFSNDLNLDPKGVSASKPKMSDSEKDLADYNSTPDSSSNANGKTGHSFSNINRGLENESLYSHSEDGSARSPYGSPAAKTPLESPSHDFSDAGFEKSPEAYGSFNDSAWGTFDNNDDVDSVWGIKPVNTKEPDSEKHRDFFGSSDFDTSSVRTGSPNADSFFQRKSPFFEDSVPPTPLSRFGNSSPRYSDVGDHYFDNSSRFDSFSMQDGSFSPQREKFSRFDSISSSRDFGNNQEKFSRFDSISSSRDFGNNQEKFSRFDSISSSRDFGHNQDKFSRFDSMSSSSMDFGQNSQRHARFDSIGSSKDFGHGTFSFDDADPFGTSGPFKVSSESHSPKKSSDNWRAF* 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26218771 26230606 + CsaV3_4G037410.1 Csa04g02715 528325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02715 1050 Pfam EF hand 7 21 IPR002048 GO:0005509
Csa04g02715 1050 MobiDBLite consensus disorder prediction 704 804 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 833 847 - -
Csa04g02715 1050 Gene3D - 356 445 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 981 1007 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 211 233 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 1029 1050 - -
Csa04g02715 1050 Gene3D - 1 96 - -
Csa04g02715 1050 SMART efh_1 365 393 IPR002048 GO:0005509
Csa04g02715 1050 SMART efh_1 3 31 IPR002048 GO:0005509
Csa04g02715 1050 SMART efh_1 399 427 IPR002048 GO:0005509
Csa04g02715 1050 SMART efh_1 37 65 IPR002048 GO:0005509
Csa04g02715 1050 SUPERFAMILY EF-hand 3 79 IPR011992 -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 824 890 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 333 351 - -
Csa04g02715 1050 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 976 1050 - -
Csa04g02715 1050 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 938 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 463 483 - -
Csa04g02715 1050 SMART eh_3 355 450 IPR000261 GO:0005515
Csa04g02715 1050 SMART eh_3 2 88 IPR000261 GO:0005515
Csa04g02715 1050 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Csa04g02715 1050 MobiDBLite consensus disorder prediction 981 1003 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 171 242 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 734 773 - -
Csa04g02715 1050 ProSiteProfiles EH domain profile. 1 90 IPR000261 GO:0005515
Csa04g02715 1050 MobiDBLite consensus disorder prediction 313 351 - -
Csa04g02715 1050 PANTHER EH DOMAIN 1 938 - -
Csa04g02715 1050 PANTHER EH DOMAIN 976 1050 - -
Csa04g02715 1050 SUPERFAMILY EF-hand 350 445 IPR011992 -
Csa04g02715 1050 ProSiteProfiles EH domain profile. 362 445 IPR000261 GO:0005515
Csa04g02715 1050 CDD EH 4 70 IPR000261 GO:0005515
Csa04g02715 1050 CDD EH 366 432 IPR000261 GO:0005515
Csa04g02715 1050 MobiDBLite consensus disorder prediction 171 192 - -
Csa04g02715 1050 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Csa04g02715 1050 Pfam Cytoskeletal-regulatory complex EF hand 356 427 IPR000261 GO:0005515
Csa04g02715 1050 MobiDBLite consensus disorder prediction 463 535 - -
Csa04g02715 1050 MobiDBLite consensus disorder prediction 848 866 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02715 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1990.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00482 Csa-Chr3:4062082 Csa04g02715 Csa-Chr4:26218771 4.28E-07 dispersed
Csa04g02715 Csa-Chr4:26218771 Csa07g00188 Csa-Chr7:1532787 2.04E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02715 Csa_Chr04 FPKM 25.748875 27.390972 18.224072 18.244062 14.057337 15.432309 13.875074 33.873055 35.444946 30.442757