Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02719 ATGGCTACGGGTATAGATTTTTCACCTCCCTTCACTCTACTGGAAGGCGGCGGATACAGTAAGGACAATGTATCACCCACAGACGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGAGCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGACATAGTGTGAGCTCCTTAAAGCTCATTGGCCAAGCTGATTTAAGCTTGGATGCTGAAACTCTTGGGAATAAATCACCTGATGGAAAAGCAGGATTCTTACCTGTCTTTAGGTCAGGTAGCTGCTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATCGATGATCTTGTTGAACATATCCATGTTTGTGAAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGTACAGACGCTGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTCCCAATTAGCGTAGAGAAGGCAATTAAGAGTGCTTTTCTGAAAGCTGACTACGCATTTGCTGATGCCAGTTCTCTGGATATCTCCTCCGGCACAACCGCCCTAACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGAGCTGTACTGGGGAGAAGGGGAAAGGCAATTGAGGTGTCAAAGGATCACAAGCCCAACTGTGCATCTGAAAAGCTTAGAATTGAGAAGCTGGGTGGGGTGATCTATGATGGATACCTGAATGGGCAGTTATCTGTGGCACGTGCAATAGGAGATTGGCACATGAAAGGTGCTAAGGGTTCTGCTTGCCCACTGAGTGCAGAGCCGGAGCTGCAGGAACTGAACTTGACGGAGGAAGACGAATTTCTAATAATGGGATGCGATGGGCTTTGGGATGTGATGAGCAGTCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCAGAGAGGTGTTCAAGAGAGCTGGTACGGGAGGCACTAAAGCGAAATACATGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCGGCTGACCCGCCCCCTCGGATAGAAATTCCTCCAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTACTGGACTGCAATTCTTGA 1161 45.99 MATGIDFSPPFTLLEGGGYSKDNVSPTDDESSDSFNSLKQMSSGKPPRHLSVMRHSVSSLKLIGQADLSLDAETLGNKSPDGKAGFLPVFRSGSCSERGPKQYMEDEHICIDDLVEHIHVCEDFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELQELNLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26235116 26240820 - CsaV3_4G037450.1 Csa04g02719 528329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02719 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Csa04g02719 386 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 373 - -
Csa04g02719 386 Gene3D - 77 354 IPR036457 -
Csa04g02719 386 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Csa04g02719 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
Csa04g02719 386 SMART PP2C_4 81 349 IPR001932 -
Csa04g02719 386 CDD PP2Cc 90 351 IPR001932 -
Csa04g02719 386 SMART PP2C_SIG_2 106 351 IPR001932 -
Csa04g02719 386 MobiDBLite consensus disorder prediction 29 44 - -
Csa04g02719 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Csa04g02719 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Csa04g02719 386 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00258 Csa-Chr2:1753627 Csa04g02719 Csa-Chr4:26235116 5.65E-107 dispersed
Csa04g02719 Csa-Chr4:26235116 Csa07g01941 Csa-Chr7:19183066 1.70E-107 dispersed
Csa04g02719 Csa-Chr4:26235116 Csa03g02203 Csa-Chr3:19119262 5.36E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02719 K14803 - csv:101205355 779.63