Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02721 ATGAGTTTCCTTTGGTTTGTTTCATTGTTATCTCTCGTTTGCGGTACTTTTCCTCTTGGATTTGGTAAGAACGTTTCGTCAAGACCATCGGTTGTGAATATTGGAGCTATTTTATCTCATAATTCTACTATTGGAAGAGTTGCCACGATTGCCATTGAAGAAGCTGTGAAAGATGTGAATGCGGATCCCAGCATTCTTCCCGGAACCAACCTCTGGTTACAAATGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTTGAAGTCTTGCAACTTATGGAGAATAAAACCGTTGCCATCATAGGCCCTCAGTCTTCTGTTGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTCCAAGTTCCTCTAGTCTCCTTTTCAGCTACTGATCCTACCCTCTCTGCCCTTCAGTTTCCTTTCTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCGGTTGCTGAGATTGTTGAACACTATCTTTGGAAAGAGGTCATTGCTATATATGTTGATGATGACTATGGGTGGAACGGAATTGCAACATTGGGCGATAAACTTGCCGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGATAATCGAGCCCAAGTTATGGATCAGCTTGTTAAAGTTGCTCTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCACCTTGGTATTTTCAGTTGCTAAGTACCTTCAAATGGTGGGCAATGGATATGTATGGATTGCGACTGATTGGCTTACGTCTTTATTAGACAGTGTTGTTCCTTTCCCTTTTGAAAACATGGAGTCGATGCAAGGAGTTCTTTCTCTACGGCAGCACACAGCAGAATCTGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACAGGTGGCTCTTTAGGTCTGAATACTTATGGTCTGTATGCATATGACTCTGTTTGGATGGTTGCTCATGCCATAGACAAATTTTTCAGTCAAGGTGGGGTCGTCACACACTCTAACGACTCCAAGTTGCATTTCAGTGAAAGTGGTGACCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCGTACTGAATAACATATTGGAGAGTGATTTTGTTGGTCTGACTGGTGCCATTAAGTTCGATTTGGACAGATCTCTTATTCATCCTGCATATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGGTGGGTTACTGGTCCAACTATTCTGGTTTATCAATTGATGCTCCTGAGTTACTCTATTCCAAACCAGCCAATCGTTCACATGCAAATCAGAAGTTGTATGAGGTGATATGGCCAGGAAATACAATAGAACAGCCTCGAGGATGGGTATTCCCAAACAATGGGAAGCTGTTAAAAATTGGTGTGCCACTTCGGGTCAGTTACAAGGAGTTTGTGTCAAAAATCAAGGGGACCGAAAATTTCCAAGGTTTCTGCATTGATGTGTTTACGGCTGCCGTAAACTTATTGCCGTATGCCGTCCCGCACGAATTTATAGCCTTTGGCGACAGCCATCACAATCCAAATTACACAGATCTTGTGTATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGGGACATAGCCATTGTCACAAGCCGTACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACGGAATACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCCGCCATGTGGATGGTCACAGCTAGTTTCTTCTTTTTTATCGGAATAGTCGTTTGGATTCTGGAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAAAAGACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTGTTTTTTGCCCATAAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTCTGATAGTAAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTTTCCAATCACAGGAATTGAAACCTTGAGGGAAGGTGGCGAACCAATAGGTTTCCAAGTTGGATCGTTTGCTGAACGCTATCTGAGAGAGGAGCTGAACATATCTAAATCTAGGCTTATTGCTCTTGGATCACCCGAAGAATATGCCAGGGCACTTGACCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTCCTATACGTAGAAAGTTTCCTCTCGAGACAGTGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCAGAGAATGGTGATCTTCAACGGATTCATGACAAATGGCTAGCGAAAAGTGCTTGCACCATGGAAAATGCAGAGCTAGAATCAGATCGACTTCAACTTAAGAGCTTCTGGGGTCTTTTTCTAATATGTGGGATAGTTTGCTTCATTGCCCTTGCCATATATTGCTTTCAGATAATTCGTCAGTTATACCATACTGAAACAGAAGAACCCGATCTATCTAGCAGTAGTGGATCACATTCTAACCGCCTTCGACGAATTATATCACTATTGGATGAGAAGAAAGAATCTTCTAAAAGGGGAAGCAAACGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGGTCGATGATCATTTGGGGGTCGATCCTTGA 2757 42.66 MSFLWFVSLLSLVCGTFPLGFGKNVSSRPSVVNIGAILSHNSTIGRVATIAIEEAVKDVNADPSILPGTNLWLQMQNSNCSGFLGMVEVLQLMENKTVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEHYLWKEVIAIYVDDDYGWNGIATLGDKLAERRCKITYKVGISPDSVDNRAQVMDQLVKVALMESRVMVLHVNPKLGTLVFSVAKYLQMVGNGYVWIATDWLTSLLDSVVPFPFENMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNTYGLYAYDSVWMVAHAIDKFFSQGGVVTHSNDSKLHFSESGDLHLEAMTIFDGGNRVLNNILESDFVGLTGAIKFDLDRSLIHPAYDIINVIGTGSRRVGYWSNYSGLSIDAPELLYSKPANRSHANQKLYEVIWPGNTIEQPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVNLLPYAVPHEFIAFGDSHHNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKRNTGAWAFLHPFSPAMWMVTASFFFFIGIVVWILEHRTNDEFRGPPKRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYFPITGIETLREGGEPIGFQVGSFAERYLREELNISKSRLIALGSPEEYARALDLGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLAKSACTMENAELESDRLQLKSFWGLFLICGIVCFIALAIYCFQIIRQLYHTETEEPDLSSSSGSHSNRLRRIISLLDEKKESSKRGSKRRKVEKSSENDKVDDHLGVDP* 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26244040 26247853 + CsaV3_4G037470.1 Csa04g02721 528331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02721 918 PANTHER GLUTAMATE RECEPTOR 3.3 12 917 - -
Csa04g02721 918 Gene3D - 578 704 - -
Csa04g02721 918 Gene3D - 147 421 - -
Csa04g02721 918 Gene3D - 474 577 - -
Csa04g02721 918 Pfam Receptor family ligand binding region 51 406 IPR001828 -
Csa04g02721 918 Gene3D - 50 396 - -
Csa04g02721 918 Gene3D - 739 774 - -
Csa04g02721 918 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Csa04g02721 918 SUPERFAMILY Periplasmic binding protein-like II 446 811 - -
Csa04g02721 918 Pfam Ligand-gated ion channel 811 841 IPR001320 GO:0015276|GO:0016020
Csa04g02721 918 MobiDBLite consensus disorder prediction 884 918 - -
Csa04g02721 918 Gene3D - 775 808 - -
Csa04g02721 918 Pfam Bacterial extracellular solute-binding proteins, family 3 486 810 IPR001638 -
Csa04g02721 918 CDD GluR_Plant 466 809 - -
Csa04g02721 918 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Csa04g02721 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 917 - -
Csa04g02721 918 SMART GluR_14 469 811 IPR001320 GO:0015276|GO:0016020
Csa04g02721 918 PIRSF IGluLR_plant 1 915 IPR017103 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02721 Csa-Chr4:26244040 Csa07g00367 Csa-Chr7:2736621 0 dispersed
Csa01g01936 Csa-Chr1:16257581 Csa04g02721 Csa-Chr4:26244040 7.51E-95 transposed
Csa01g01948 Csa-Chr1:16354841 Csa04g02721 Csa-Chr4:26244040 3.13E-18 transposed
Csa01g02110 Csa-Chr1:18392992 Csa04g02721 Csa-Chr4:26244040 3.50E-143 transposed
Csa02g02099 Csa-Chr2:19099467 Csa04g02721 Csa-Chr4:26244040 2.72E-100 transposed
Csa03g04094 Csa-Chr3:35891280 Csa04g02721 Csa-Chr4:26244040 4.61E-155 transposed
Csa04g02721 Csa-Chr4:26244040 Csa06g03402 Csa-Chr6:28181168 0 wgd
Csa04g02721 Csa-Chr4:26244040 Csa07g00194 Csa-Chr7:1584463 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02721 K05387 - csv:101204862 1802.72