Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02726 ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG 558 55.02 MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26261020 26261577 + CsaV3_4G037520.1 Csa04g02726 528336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02726 185 PANTHER RING-H2 FINGER PROTEIN ATL8 2 178 - -
Csa04g02726 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 148 IPR013083 -
Csa04g02726 185 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Csa04g02726 185 SUPERFAMILY RING/U-box 83 150 - -
Csa04g02726 185 MobiDBLite consensus disorder prediction 170 185 - -
Csa04g02726 185 Pfam Ring finger domain 101 144 IPR001841 -
Csa04g02726 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 178 - -
Csa04g02726 185 MobiDBLite consensus disorder prediction 159 185 - -
Csa04g02726 185 CDD RING-H2_PA-TM-RING 101 144 - -
Csa04g02726 185 SMART ring_2 102 143 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02726 Csa-Chr4:26261020 Csa06g02802 Csa-Chr6:24445951 4.03E-31 dispersed
Csa04g02726 Csa-Chr4:26261020 Csa06g00229 Csa-Chr6:1576669 1.38E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02726 - - csv:101207021 372.089