Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02738 ATGTCGGGATCTGAGACCGGAGTGATATCCAGCGGCGAACACTTCACCATCGGTCTTCAAAAGAACTCAGTACCGTCACAACAGCCAGTCATGCAGAGCATGCATTTACCCTTTGGTGCAGATGGCGTCTATAAGCCTGTTGCCACGGCCTCTCCCACCTACCAATCCTCCAGCGTCGGAGTTGCTGGTAATGCTGGTGCCGATGGATCTGCTCGTGATGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGAAGACCTCGAAAGTATGGGCCAGATGGCAGTATGGCAGTGGCTCCTGCAGTCCGCCCTGCCGCTGCAACTCAGTCCAGTGGAGGTTTTTCTCCTTCTCCGACGGCCGCCCCTCAGTCGGGAAGATCAGCTTCTCCAACTTCTTTGAAGAAACCCAGAGGCAGACCCCCTGGCTCCTCCACCAAAAAACATCACTTGGATACTTCGGAGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATTCTTACAGCAAATGGAGCAATATCCAATGTGACCCTACGTCAGCCAGCCATGTCTGGTGGAACTGTGACTTACGAGGGGCGATTCGAGATTTTATCGTTATCTGGGTCCTATCTCCTCTCAGAGAATGGCGGCCAGCGGAGTCGAACTGGAGGGCTAAGTGTTTCATTATCTGGACCAGATGGCAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCATCTCCTGTACAGGTGGTCGTGGGGAGTTTCGTCACTGATGGGGGGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGCCCCCTGTTTCTGCACCCCATAAACTTGCTCCGATCCGTGCTGGAATGACGGGGGCCAGCAGCCCTCCATCACGTGGGACTCTGAGTGAATCCTCAGGAGGGCCCGGGAGTCCATTTAATCAGAGTGCTGGAGCCTGCAACAATAACACCATACCTTGGAAGTGA 1056 52.18 MSGSETGVISSGEHFTIGLQKNSVPSQQPVMQSMHLPFGADGVYKPVATASPTYQSSSVGVAGNAGADGSARDAFVNMNSQSEPVKRKRGRPRKYGPDGSMAVAPAVRPAAATQSSGGFSPSPTAAPQSGRSASPTSLKKPRGRPPGSSTKKHHLDTSESAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHKELRQVNQIEQPPVSAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAGACNNNTIPWK* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26296064 26298610 - CsaV3_4G037640.1 Csa04g02738 528348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02738 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 288 - -
Csa04g02738 351 MobiDBLite consensus disorder prediction 310 351 - -
Csa04g02738 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 16 345 - -
Csa04g02738 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 345 IPR039605 GO:0003680
Csa04g02738 351 ProSiteProfiles PPC domain profile profile. 161 301 IPR005175 -
Csa04g02738 351 CDD DUF296 166 280 IPR005175 -
Csa04g02738 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 167 281 IPR005175 -
Csa04g02738 351 Gene3D - 167 297 - -
Csa04g02738 351 MobiDBLite consensus disorder prediction 113 136 - -
Csa04g02738 351 MobiDBLite consensus disorder prediction 76 162 - -
Csa04g02738 351 MobiDBLite consensus disorder prediction 1 21 - -
Csa04g02738 351 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Csa04g02738 351 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Csa04g02738 351 MobiDBLite consensus disorder prediction 317 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02738 Csa-Chr4:26296064 Csa06g02206 Csa-Chr6:19888856 3.66E-119 dispersed
Csa04g02738 Csa-Chr4:26296064 Csa03g00180 Csa-Chr3:1332208 5.50E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02738 - - csv:101207513 665.225