Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02738 | ATGTCGGGATCTGAGACCGGAGTGATATCCAGCGGCGAACACTTCACCATCGGTCTTCAAAAGAACTCAGTACCGTCACAACAGCCAGTCATGCAGAGCATGCATTTACCCTTTGGTGCAGATGGCGTCTATAAGCCTGTTGCCACGGCCTCTCCCACCTACCAATCCTCCAGCGTCGGAGTTGCTGGTAATGCTGGTGCCGATGGATCTGCTCGTGATGCTTTCGTTAACATGAATTCGCAAAGCGAGCCTGTAAAGAGGAAGAGAGGAAGACCTCGAAAGTATGGGCCAGATGGCAGTATGGCAGTGGCTCCTGCAGTCCGCCCTGCCGCTGCAACTCAGTCCAGTGGAGGTTTTTCTCCTTCTCCGACGGCCGCCCCTCAGTCGGGAAGATCAGCTTCTCCAACTTCTTTGAAGAAACCCAGAGGCAGACCCCCTGGCTCCTCCACCAAAAAACATCACTTGGATACTTCGGAGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTAAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTCCTAGAGCTGTTTGTATTCTTACAGCAAATGGAGCAATATCCAATGTGACCCTACGTCAGCCAGCCATGTCTGGTGGAACTGTGACTTACGAGGGGCGATTCGAGATTTTATCGTTATCTGGGTCCTATCTCCTCTCAGAGAATGGCGGCCAGCGGAGTCGAACTGGAGGGCTAAGTGTTTCATTATCTGGACCAGATGGCAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCATCTCCTGTACAGGTGGTCGTGGGGAGTTTCGTCACTGATGGGGGGCACAAGGAATTGAGACAAGTAAACCAAATAGAACAGCCCCCTGTTTCTGCACCCCATAAACTTGCTCCGATCCGTGCTGGAATGACGGGGGCCAGCAGCCCTCCATCACGTGGGACTCTGAGTGAATCCTCAGGAGGGCCCGGGAGTCCATTTAATCAGAGTGCTGGAGCCTGCAACAATAACACCATACCTTGGAAGTGA | 1056 | 52.18 | MSGSETGVISSGEHFTIGLQKNSVPSQQPVMQSMHLPFGADGVYKPVATASPTYQSSSVGVAGNAGADGSARDAFVNMNSQSEPVKRKRGRPRKYGPDGSMAVAPAVRPAAATQSSGGFSPSPTAAPQSGRSASPTSLKKPRGRPPGSSTKKHHLDTSESAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVTDGGHKELRQVNQIEQPPVSAPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAGACNNNTIPWK* | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26296064 | 26298610 | - | CsaV3_4G037640.1 | Csa04g02738 | 528348 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02738 | 351 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 165 | 288 | - | - | |
Csa04g02738 | 351 | MobiDBLite | consensus disorder prediction | 310 | 351 | - | - | |
Csa04g02738 | 351 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 | 16 | 345 | - | - | |
Csa04g02738 | 351 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 16 | 345 | IPR039605 | GO:0003680 | |
Csa04g02738 | 351 | ProSiteProfiles | PPC domain profile profile. | 161 | 301 | IPR005175 | - | |
Csa04g02738 | 351 | CDD | DUF296 | 166 | 280 | IPR005175 | - | |
Csa04g02738 | 351 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 167 | 281 | IPR005175 | - | |
Csa04g02738 | 351 | Gene3D | - | 167 | 297 | - | - | |
Csa04g02738 | 351 | MobiDBLite | consensus disorder prediction | 113 | 136 | - | - | |
Csa04g02738 | 351 | MobiDBLite | consensus disorder prediction | 76 | 162 | - | - | |
Csa04g02738 | 351 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa04g02738 | 351 | SMART | AT_hook_2 | 86 | 98 | IPR017956 | GO:0003677 | |
Csa04g02738 | 351 | SMART | AT_hook_2 | 139 | 151 | IPR017956 | GO:0003677 | |
Csa04g02738 | 351 | MobiDBLite | consensus disorder prediction | 317 | 351 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02738 | Csa-Chr4:26296064 | Csa06g02206 | Csa-Chr6:19888856 | 3.66E-119 | dispersed | |
Csa04g02738 | Csa-Chr4:26296064 | Csa03g00180 | Csa-Chr3:1332208 | 5.50E-70 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02738 | - | - | csv:101207513 | 665.225 |