Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02739 ATGGAGAAGGGGCCAACTACTGTTTCAGCCATGGAAGCCTTTGAGAAGCTGGAGAAGGTCGGAGAAGGAACTTACGGTAAGGTTTATAGGGCAAGGGAGAAGGCCACCGGCAAGATTGTGGCGCTCAAGAAGACGCGCCTTCATGAAGATGAGGAAGGCGTTCCTCCTACCACTCTCAGAGAAGTTTCTATTCTAAGAATGCTTTCTCGGGATCCTCATATTGTTAGGTTGATGGATGTCAAACAAGGCCAGAACAAGGAAGGAAAAACCGTCCTTTACTTGGTTTTTGAATACATGGATACCGATCTGAAGAAATTCATCAAGAGTTTTCGTCATACGGGAGAAAACATTCCCGTTAACACTGTCAAGAGTTTGATGTATCAACTCTGCAAGGGTGTTGCCTTCTGCCATGGCCATGGAATCCTGCACAGGGATCTGAAACCACACAATCTCTTGATGGACCGAAAGACTATGATGCTCAAAATTGCAGACCTTGGGTTGGCTCGAGCATTTACTGTCCCAATTAAGAAGTATACTCACGAGATACTAACCCTCTGGTATAGAGCTCCCGAAGTTCTGTTGGGAGCAACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGCCTGCATATTCGCCGAACTTGCCACCAAGCAGCCTCTCTTTCCTGGAGATTCTGAGTTGCAGCAGCTCCTTCATATCTTCAGGTTATTAGGGACCCCAAATGAAAAGGTCTGGCCTGGTGTGAGCAAACTAATGAACTGGCATGAGTATCCCCAGTGGAACCCCCAAAGCCTTTCAACTGCAGTCCCTAACTTGGATGATAAAGGACTTGATCTACTTTCAAAAATGTTGAAGTATGAACCCTCAATGCGTATTTCAGCAAAGAAGGCAATGGAACATCCTTACTTTGATGACTTGAACAAGGAATATCTCTGA 939 45.47 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRHTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVACIFAELATKQPLFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWNPQSLSTAVPNLDDKGLDLLSKMLKYEPSMRISAKKAMEHPYFDDLNKEYL* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26301211 26303097 + CsaV3_4G037650.1 Csa04g02739 528349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02739 312 SMART serkin_6 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02739 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Csa04g02739 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Csa04g02739 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Csa04g02739 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02739 312 PANTHER CELL DIVISION PROTEIN KINASE 7 309 - -
Csa04g02739 312 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Csa04g02739 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02739 312 Gene3D Transferase(Phosphotransferase) domain 1 102 311 - -
Csa04g02739 312 PANTHER - 7 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01158 Csa-Chr4:9986452 Csa04g02739 Csa-Chr4:26301211 5.57E-156 dispersed
Csa04g02739 Csa-Chr4:26301211 Csa07g00931 Csa-Chr7:7979653 1.95E-117 dispersed
Csa04g02739 Csa-Chr4:26301211 Csa05g02741 Csa-Chr5:28151896 5.59E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78203 PF00069 Pkinase 3.20E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02739 K07760 - csv:101208001 638.262