Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02748 ATGAAGTTTCTCCAGTTATTTGGCTGGGAACAAGCACCAAACCTTGATTGTCGGAATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGTAGATGAGCACTTCTCTGACAACACATTCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGACCACATTGCAGATCCTTTCCACAATAACTTTCTTTCCCTGCTCAATTCTTCATTTAGTCGTTAA 816 44.0 MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIVDEHFSDNTFSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26342869 26346713 + CsaV3_4G037740.1 Csa04g02748 528358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02748 271 Gene3D Chlorophyll a/b binding protein domain 53 265 - -
Csa04g02748 271 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC 44 262 - -
Csa04g02748 271 SUPERFAMILY Chlorophyll a-b binding protein 45 267 - -
Csa04g02748 271 Pfam Chlorophyll A-B binding protein 63 238 IPR022796 -
Csa04g02748 271 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 44 262 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00560 Csa-Chr1:3626647 Csa04g02748 Csa-Chr4:26342869 3.84E-33 dispersed
Csa04g02748 Csa-Chr4:26342869 Csa07g00262 Csa-Chr7:2041428 1.09E-62 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02748 K14172 - csv:101209460 446.817