Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02749 ATGATGCCTCACATGGATGTGCTCCCCGACGACGAGAAGTGTGCCTTGGATATGAGTACCTACGAGAATTTGTCTAATGTTTGCAATGCACCACCTCTTCACTCTGCTACTCCCATTCCTAAGGATGATACCGATGGTTCTTACGTTTTCGTTACCTCCGTCGATGCTGCTACTAACCTTGATCACGCTGCTCCTGATCTTAATGCCCAACCAATGTGTTCTCATATTGTTGATGCCCAGATTCAGGTTCATAATCCTGATGAATTGAAGGATTCCCAATTCAGCCTTTCCGAGCATATCAAAGAGAGTGACGCAGTTCGGGATAAGATCAGACTGGCGGATGTCCTTCATTCTTCTGACGCCAAGGTGGATGAAGCGGAACCTGGACTCCATTCTTCTCAAACCGTGGAACAAACTCGAGTCTTGGAAAACCAGACTATCAACGAATCATTTGATGCGGAGACAAATTCTGGCCAAATCCATGGGCTACATTCTCCTCAAGAAGTTGAAGACAATCAGATTCGGGAGGAAAATCAAAGAATTTCTACCTCTGGATCTTCTAACACCGATGCAAATCTTAGTGGACAAATCGAGGTGGAGTCTTCCCAAATGGCGGAAGATATTCAAATTCATGAGGATAACGGAATTGTGGAAATCATGAAGTCTTCTGGTACCGAGACAAATCTTGTGGTGAACATTGAGGCGGAGTGTTCTCAGAAGGAAGATGGCATCCAGATTCACAAGGATAATGGAACTGTTGCAATCAAGTTTTCTGATACCGAGTCGAACCCTGGGGAAGAGATTGAGGTCCAGTCTTCTCCAAAGGCACAGGACAATCAGAATCACGAGGAAAATGGCATAATGAAAGCCTTCGAATTATCTGATGCCGAGGCAAATCCTAGGTCAGAAATTGAGGTGGAGTCTTCACGGGAGATGGAAGACATTGAGCTTCAGGGGCAAAATGAAGTAGTGGATACAATAAAATCTTCTACTACTATGGAAAACCGTGGGCAAGAAGGTGAAGTAATTCCCGGGTATAATGAAAGAGTGGTTAGCATTGAATTGTCCAATGCCATACATGACAGCAGTGAAGAAGCTGAGATGGAATCTTTCGAGAGAGATGAAGGCATTCAAGAGGCAGAAGATGCAGATGTGGAGGCTGCTGACTGCTGTTGCGTTACTGGCAAAGAGATTGTTGATGGGATGGTAAATAAAGATGTGATAAGCGACCCTATAGGAGGAATAGAGGAATCTCAAATTATAACTATGGGTGCTGCTAAATCTGACCTAGATCATTCTGATGATTCAATGGAAAACGTTAAGGAGGAATGTACATCAGGGGTTGCCTTGAATGACAAGAACTCTGAGATAACTCAATTTACAATTTGTCAGGATGGTGACCATTACCAGGTTGTTGGTGAGGAACTAGAAAATTTAAACAATGAAGTTTGTCTTTTAGAGCCATCAGAAGAAAACAAAGCGGAGGTGGAGCAGCATTTGGCAGCAACTCCTAGTCCACTAGTCAGTTCAGAAGACATAAATGGTTCTATCTCAATTAGCTCGGAAGATGGCTTGCCGACTAGTATGGATCAAGATGACCCCTTGGGAACTATTGATGGCAACGACACTGTAGCTAACAGGACCAGCTTCCATGACCACACTGAAACCTTGTCTGGCTCTGTAGTGTGTGATATTGCTACTGTTGAAACTCATGAATTATCTCCTACGGTGCTTATTACTGATCCAATATTAGAGTTAAATGAGATTACTGTAAATGAACAAGAGGTGAATCACGTGTTGGAACTAGAAGAGAACTCAGAAATGGTTTCTAATCCTAAAGTGGACAAATGTGAGGTTGAAGTTTTGGAAGATATGGTTTCTGGCAATGAAGATGATATGCCCACTGCACTCGACAAATCTAAAATTTACTGTGGTGATGACTTTGTTGCTGACAGTCAATTAGTCGCTGAGGACATTGGAACATTGGAAAGCACTGACACAGCAGTATCTGCTGTTGTGATAGGAAATACTTCAATTGAAATAAGGGAACCTGCCTCTACGAATTTTCCTAATGATCCATTAGTGAGATCTGATCTTGATGTTGAGGATTGTACAATTTCTGAAATTGGGACTTCTGCTGGTGATGTTGTCCAACCGGATAAAGAAGTCAGTGAAAGTCATGAGGTTGGTTTTCTTGGTAACTCTAATTTAGAAACTAAATGTGAGGATGATCACGTGGAAAAAGATCACCTAGTACCTTCCCATTGTAACGATTGTCCTTCAGTTGAATGTGAAGAGAGAGGTTCCACTGTTCCTGAAGTTCCTAATGGCGTTGATAAATCTTCTGCAATTCAACTAATTTCTGCTGTTGCAAGAGACTCAGAATTGCATGATAACAAAAGTAGCTCAAGTCCAACTGCTAATGAGAAACCAGAAGATGACATCAAGATTCCATCCTCCATAGGAGATGATAGGAGAAATATACCTGGCAATGATTGCAGTGTGTCAAACACTGAAATTCTCAAGGATTTTATATTAAACAAAGAAGAGAATCTGCACTTATTGTCCGATGTTGTCTCTGAAATTGATGGTAAACCAACAACAGAAGAAATTGAGGTCAATCGTGAGGGTTGCCAGAATGAACCATCATCTATTTCTCCAGAAGGTTCTGGTGATGCTTTAACAGGGCAAAATGTAGGGGCTGAGGCAGGAACAAGGCCGTTTAACTTTTTGGTTAAGGTGCCTCGATTTGATGACAAAAACATAAGAGAGCAGATTAAATGTGCTCAGGCAGAAGTTGATTGGAAGACCAAGGACCGAGATGCTATTCGGGTTCAAATACAGACAATGAGGGCTGCATGGAAAGTGTTGAGTGATAATCTTGAAGCAGCTGTGTCGGAGGGAAGAGCTGCAAGAGATTTGCTGAAGTCAAAAAGACTGGAGATAGACTCTGTTCAATCAGTGATAACAAAAGTGAAGAATGCCATGTCTGTTGAGGACATCGATGGCAGGATACGCAACATTGAACATATGATCGAGCATGAAACACTGCCACTAAAGGAGGAAAAGCAATTGATTCGTGAAATCAAGCAATTGAAGCAGGTGCGGGAACAGCTTTCATCAACTATGGGTAAGCAGGATGAGCTTCAACAGGCATTGGACCAGAAAGATCATATTGAAGAGCGCCTTAAGCTATTAAGAAAGGAGATGGATTTACTGAGGGACAATGTTCTGAAGGCAGAATCAGTTATAAAGGCTGCCAAGAAGAAATATAATGATGAAAGCATAAAGCTGGATGAGTTGCAATCCCAGTTTAAAGCAGCAGATAAGATTCGTCAAGAAGCATATGCTAATTTACAGAGTATGAGGAAGCAATTATATGAGAAGAACAAATACTGCTGGAAGTATCGGGATGACGCAAAGGAAGCCAGTGAAATAGCATCAAGTCGAGACATAGAGAAAGTGCAACATTTTTGCGTTAATCAGGTGGAGCGCATGATGGAACTGTGGAACACAAATGCTGAGTTCAGGGAAGAATATATTAAGAGTAACATGAGGAGTACTGTGAGGCGACTAAAGACGTTGGATGGGCGCTCCCTTGGCCCCAATGAAGAGCCACATGTACTGAATCTTATTGTTAAGGAGGGGTCAGCGAGGGACAATTCTCTTTCAACGGTTTCAACAACCGAGGAATCTGGAAAACCAATATCTGCTTATGATGCGAGTGATAACAAACCAGAGACCAAAGTAGCCGAAGAGAAGAACCAAATGACAAAAAAGAAGCCTGTAACAGTTGTGGGCTTAGTGACTGCCCCTAGAAATATCTCTAGGGAGAATGAGGTAGAAGAGCCACCACGACCGGAGGAGATTAAGCGAACAAGAGAAGAAGAGGAGCTGGCAGCGAAAGTAGAAGAGTTGAGAAAGGAAGAGGAAGCAATGAAGTTGAAGGAGCAACGGAAGTTGGAAGAGAGGGCCAAAGCCAAAGAGGCGTTGGAGAGGAAAAAACGAAATGCTGAGAAAGCCCAGGCCAGGGCAGTAATCAAAGCACGAAAAGAGGCAGAAGAGAGAGAGAAGCTAAGGGAGAAGAGAGCAAAAAAGAAGGAAAGGAAAATGGCAGCTGAGACAGAAGCTGGTAATGATTGGGACGAAAGGGATTCTGCTTTAGTCACGGAGACCCCTTCAGAAACTCAGAAGGAAGAGTCTGAAAACACAGGTAAACCGGGGATGGCAGCGAAGAAGCCTCAAAAAGCTTTGCAGTACACAAAACAGAGCAAGACAAAGTCAATTCCTCCGCCACTTCGAAATCGGGGTAAGAGAAGGATGCAACCATGGATGTGGGTTCTTCTGTCAACCGTGGTTGTTTTTGCACTGTTCTTCGTCGGACAACAACGGCTTCTCTACTAG 4404 42.94 MMPHMDVLPDDEKCALDMSTYENLSNVCNAPPLHSATPIPKDDTDGSYVFVTSVDAATNLDHAAPDLNAQPMCSHIVDAQIQVHNPDELKDSQFSLSEHIKESDAVRDKIRLADVLHSSDAKVDEAEPGLHSSQTVEQTRVLENQTINESFDAETNSGQIHGLHSPQEVEDNQIREENQRISTSGSSNTDANLSGQIEVESSQMAEDIQIHEDNGIVEIMKSSGTETNLVVNIEAECSQKEDGIQIHKDNGTVAIKFSDTESNPGEEIEVQSSPKAQDNQNHEENGIMKAFELSDAEANPRSEIEVESSREMEDIELQGQNEVVDTIKSSTTMENRGQEGEVIPGYNERVVSIELSNAIHDSSEEAEMESFERDEGIQEAEDADVEAADCCCVTGKEIVDGMVNKDVISDPIGGIEESQIITMGAAKSDLDHSDDSMENVKEECTSGVALNDKNSEITQFTICQDGDHYQVVGEELENLNNEVCLLEPSEENKAEVEQHLAATPSPLVSSEDINGSISISSEDGLPTSMDQDDPLGTIDGNDTVANRTSFHDHTETLSGSVVCDIATVETHELSPTVLITDPILELNEITVNEQEVNHVLELEENSEMVSNPKVDKCEVEVLEDMVSGNEDDMPTALDKSKIYCGDDFVADSQLVAEDIGTLESTDTAVSAVVIGNTSIEIREPASTNFPNDPLVRSDLDVEDCTISEIGTSAGDVVQPDKEVSESHEVGFLGNSNLETKCEDDHVEKDHLVPSHCNDCPSVECEERGSTVPEVPNGVDKSSAIQLISAVARDSELHDNKSSSSPTANEKPEDDIKIPSSIGDDRRNIPGNDCSVSNTEILKDFILNKEENLHLLSDVVSEIDGKPTTEEIEVNREGCQNEPSSISPEGSGDALTGQNVGAEAGTRPFNFLVKVPRFDDKNIREQIKCAQAEVDWKTKDRDAIRVQIQTMRAAWKVLSDNLEAAVSEGRAARDLLKSKRLEIDSVQSVITKVKNAMSVEDIDGRIRNIEHMIEHETLPLKEEKQLIREIKQLKQVREQLSSTMGKQDELQQALDQKDHIEERLKLLRKEMDLLRDNVLKAESVIKAAKKKYNDESIKLDELQSQFKAADKIRQEAYANLQSMRKQLYEKNKYCWKYRDDAKEASEIASSRDIEKVQHFCVNQVERMMELWNTNAEFREEYIKSNMRSTVRRLKTLDGRSLGPNEEPHVLNLIVKEGSARDNSLSTVSTTEESGKPISAYDASDNKPETKVAEEKNQMTKKKPVTVVGLVTAPRNISRENEVEEPPRPEEIKRTREEEELAAKVEELRKEEEAMKLKEQRKLEERAKAKEALERKKRNAEKAQARAVIKARKEAEEREKLREKRAKKKERKMAAETEAGNDWDERDSALVTETPSETQKEESENTGKPGMAAKKPQKALQYTKQSKTKSIPPPLRNRGKRRMQPWMWVLLSTVVVFALFFVGQQRLLY* 1468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26350177 26358269 + CsaV3_4G037750.1 Csa04g02749 528359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02749 1467 Coils Coil 1292 1376 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 1276 1298 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 1217 1235 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 506 527 - -
Csa04g02749 1467 Coils Coil 1022 1104 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 1313 1406 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 1274 1298 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 792 833 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 261 281 - -
Csa04g02749 1467 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 227 1460 - -
Csa04g02749 1467 PANTHER CALPONIN-LIKE DOMAIN PROTEIN 227 1460 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 875 894 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 1245 1259 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 807 821 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 1313 1437 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 1217 1259 - -
Csa04g02749 1467 MobiDBLite consensus disorder prediction 877 893 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02749 - - - csv:101219495 2719.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02341 Csa-Chr4:23866189 Csa04g02749 Csa-Chr4:26350177 1.89E-38 dispersed
Csa04g02749 Csa-Chr4:26350177 Csa06g00810 Csa-Chr6:6489450 8.79E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g25 Blo01g01657 . . . Bpe02g00286 . . . . . Cma01g02052 Cma09g00011 Car01g01616 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02435 Csa04g02749 . . . . . . . . . . . Cmo01g02107 Cmo09g00011 . . . . . Cpe02g00007 . . . . . . . . . . . . . . . . Chy07g00437 Cme07g00014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011484 0 2 2 0 2 0 2 0 0 1 0 1 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02749 Csa_Chr04 FPKM 24.617414 28.75617 17.10059 19.00432 8.030231 10.049242 8.243317 59.007278 54.566303 58.483776