Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02750 ATGGACGACCCCGGTGCCCAAGTCGTTCCTCCTATTTTCATCCACCAATCCTTGACTAGTCGCTACACTGATCTCCCTTCCATCCCCAAGAAGCGTCCCTTATCCTATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCTCTAAATTCCTCACCAAACCCTCCAACCTAAACAACACCACTCTCGATGACCACGATGACACTCTTCGCCTTAATCTTGGTGGTCGTTACGTTGAGGACCCTGTTTCCAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGCCTCTGTCACCTACCCTATGTGCCAAGTCGATAATTGTAAGGAAGATCTCTCCAATGCCAAAGACTATCATCGCAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCACCCTCTTTCCGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGGCTTGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGGCCAGGAAGTAGAGGACCCCCAAGCACTGGAAATCTTGACATCGTCAGTCTATTAACTGTTCTAGCTAGGGCTCAAGGCAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCTGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAAGGGGAAGGCTCCTCCACAAAGTTCTCTTCAGCATCAAAACAAATTAAATGGTAATCCGTCTTCTCCTTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCGCATCAGCTCCGGATGCTCTTGCAATGCTGTCACAGAAGAGCAGTGTCAGTAGTGATAGTGAAAAAACAAGGTCATCCTGCCCATCTGGTTCTGATCTTCAGAATAGGCCTCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCCGATGGGCAGGTTCAAGGAACCCGAGTTGGTTTGCCACTTCAGCTCTTTGGCTCTTCGCCAGAACATGATGCCCCACCGAACTTGACCGCTTCTAGAAAGTACTTCTCTTCGGATAGCAGCAATCCTATTGAAGAGAGGTCTCCATCATCTTCACCTCCTCTCCTGCAAACGTTGTTCCCCGTGCAAAGCACGGAAGAAACTACCAGTAATGGGAAAATGCCAATCAGAAAAGAAGTTAATGGTGTTGAGGTTCGAAAACCTCCTAGTAGCAATATTCCCTTTGAACTTTTCAGAGAGTTGGATGGAGCAAGACCAAATTCGTTTCAAACTATTCATTACCAAGCTGGATACACTTCTTCCGGGTCTGATCATTCACCTTCTAGCTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAGCTTTTTGAAAAGGATCCCAGTCAGTTTCCAGGGACGTTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAGATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCGGTTTATATGTCCATGTCATCCATTGCATGGGAACGGCTTGAAGAAAATTTGGTTCTGCATCTTAAATCTTTGGTTCATAGTGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTATACTGGGAGGCAACTAGCGTCACACAAGGATGGAAAGATTCATCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAACCTCAGTGTCACCTTTGGCAGTTGTGAGCGGACAAAAGACCTCATTTTTATTAAGGGGAAGGAATTTGAAAATTCCTGGCACCAGGATCCATTGCACATCTATGGGAGGCTACATATCTGAAGAAGTAATGGGATTAAGTAGTCTGGGATTAAGTAGTGAGGGAATTTACGACGAAATACATTCTAGAAGTTTCAAAGTTGGAGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAATAGTTTCCCTGTTATCATAGCCGATGCTACCATCTGTAGGGAATTAAGGCATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCTGATAGCAGTTTAGAAAGTCATTCATCTGTTTCTTCGCAACCAAGGCTAAGGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTGTTCCAAAGGGAAAGGTTCTCTTATGAGCTAGATAATCCAGATTTTTTAATAAGGCGGTTCAGATTCTTACTCACGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTGAAAACGCTTCTTGACATTTTGGCCAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAGCTTCAGCTCTTAAACCGGTCAGTGAAAAGGAGGTGCAGGCAGATGGTTGACTTACTTGTTCATTATCATGTATCTGGCGTTGGTGATTCAGAGAAAAAATACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACTCCTCTGCATTTGGCAGCGTCAATGGCAGATGCAGAAAATTTGGTTGATGCTCTAACAAATGACCCGCTAGAGATTGGTTTGGAATGCTGGAGTTCCCAACTTGATGAAAGTGGAAGGTCGCCACAGGCTTATGCTTTAATGAGGGGTAATCATAATTGTAATGAGCTGGTGAAGCGAAAACTTGCTGACAGAAAGAATGGTCAAGTTTCAGTTAGAATTGGGAATGAGATAGAACAGCTAGAGGTGTCAAGTGGTGAGCGGGGGAGGGTGAAAGGTAGGTCCTGCTCCAGATGTGCTGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACACACAGGTTACTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCTGTTTGCGTTTGTGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTAGGCTATGGGACAATTTAG 3096 45.12 MDDPGAQVVPPIFIHQSLTSRYTDLPSIPKKRPLSYHQGQLHPHTWNPKAWDWDSSKFLTKPSNLNNTTLDDHDDTLRLNLGGRYVEDPVSKPPKKVRPGSPASVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLAASAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSSPPLLQTLFPVQSTEETTSNGKMPIRKEVNGVEVRKPPSSNIPFELFRELDGARPNSFQTIHYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFEKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWERLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQLASHKDGKIHLNKSSKAWSNPELTSVSPLAVVSGQKTSFLLRGRNLKIPGTRIHCTSMGGYISEEVMGLSSLGLSSEGIYDEIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFDEFKVPDSSLESHSSVSSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISELQLLNRSVKRRCRQMVDLLVHYHVSGVGDSEKKYLFPPNFIGPGGITPLHLAASMADAENLVDALTNDPLEIGLECWSSQLDESGRSPQAYALMRGNHNCNELVKRKLADRKNGQVSVRIGNEIEQLEVSSGERGRVKGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI* 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26359110 26365159 + CsaV3_4G037760.1 Csa04g02750 528360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02750 1031 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
Csa04g02750 1031 MobiDBLite consensus disorder prediction 314 417 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 264 289 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 267 289 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 314 338 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 190 206 - -
Csa04g02750 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 1031 IPR044817 GO:0003677
Csa04g02750 1031 SUPERFAMILY SBT domain 108 188 IPR036893 GO:0003677|GO:0005634
Csa04g02750 1031 Pfam SBP domain 110 183 IPR004333 GO:0003677
Csa04g02750 1031 Gene3D - 101 171 IPR036893 GO:0003677|GO:0005634
Csa04g02750 1031 MobiDBLite consensus disorder prediction 391 417 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 346 363 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 176 206 - -
Csa04g02750 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 38 1031 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02851 Csa-Chr3:27286153 Csa04g02750 Csa-Chr4:26359110 7.43E-37 dispersed
Csa04g02332 Csa-Chr4:23787743 Csa04g02750 Csa-Chr4:26359110 1.20E-36 dispersed
Csa04g02750 Csa-Chr4:26359110 Csa03g03589 Csa-Chr3:32029162 2.34E-32 dispersed
Csa04g02750 Csa-Chr4:26359110 Csa06g00818 Csa-Chr6:6551819 3.19E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31652 PF03110 SBP 3.50E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02750 - - csv:101219733 1966.43