Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02750 ATGGACGACCCCGGTGCCCAAGTCGTTCCTCCTATTTTCATCCACCAATCCTTGACTAGTCGCTACACTGATCTCCCTTCCATCCCCAAGAAGCGTCCCTTATCCTATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCTCTAAATTCCTCACCAAACCCTCCAACCTAAACAACACCACTCTCGATGACCACGATGACACTCTTCGCCTTAATCTTGGTGGTCGTTACGTTGAGGACCCTGTTTCCAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGCCTCTGTCACCTACCCTATGTGCCAAGTCGATAATTGTAAGGAAGATCTCTCCAATGCCAAAGACTATCATCGCAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCACCCTCTTTCCGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGGCTTGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGGCCAGGAAGTAGAGGACCCCCAAGCACTGGAAATCTTGACATCGTCAGTCTATTAACTGTTCTAGCTAGGGCTCAAGGCAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCTGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAAGGGGAAGGCTCCTCCACAAAGTTCTCTTCAGCATCAAAACAAATTAAATGGTAATCCGTCTTCTCCTTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCGCATCAGCTCCGGATGCTCTTGCAATGCTGTCACAGAAGAGCAGTGTCAGTAGTGATAGTGAAAAAACAAGGTCATCCTGCCCATCTGGTTCTGATCTTCAGAATAGGCCTCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCCGATGGGCAGGTTCAAGGAACCCGAGTTGGTTTGCCACTTCAGCTCTTTGGCTCTTCGCCAGAACATGATGCCCCACCGAACTTGACCGCTTCTAGAAAGTACTTCTCTTCGGATAGCAGCAATCCTATTGAAGAGAGGTCTCCATCATCTTCACCTCCTCTCCTGCAAACGTTGTTCCCCGTGCAAAGCACGGAAGAAACTACCAGTAATGGGAAAATGCCAATCAGAAAAGAAGTTAATGGTGTTGAGGTTCGAAAACCTCCTAGTAGCAATATTCCCTTTGAACTTTTCAGAGAGTTGGATGGAGCAAGACCAAATTCGTTTCAAACTATTCATTACCAAGCTGGATACACTTCTTCCGGGTCTGATCATTCACCTTCTAGCTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAGCTTTTTGAAAAGGATCCCAGTCAGTTTCCAGGGACGTTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAGATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCGGTTTATATGTCCATGTCATCCATTGCATGGGAACGGCTTGAAGAAAATTTGGTTCTGCATCTTAAATCTTTGGTTCATAGTGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTATACTGGGAGGCAACTAGCGTCACACAAGGATGGAAAGATTCATCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAACCTCAGTGTCACCTTTGGCAGTTGTGAGCGGACAAAAGACCTCATTTTTATTAAGGGGAAGGAATTTGAAAATTCCTGGCACCAGGATCCATTGCACATCTATGGGAGGCTACATATCTGAAGAAGTAATGGGATTAAGTAGTCTGGGATTAAGTAGTGAGGGAATTTACGACGAAATACATTCTAGAAGTTTCAAAGTTGGAGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAATAGTTTCCCTGTTATCATAGCCGATGCTACCATCTGTAGGGAATTAAGGCATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCTGATAGCAGTTTAGAAAGTCATTCATCTGTTTCTTCGCAACCAAGGCTAAGGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTGTTCCAAAGGGAAAGGTTCTCTTATGAGCTAGATAATCCAGATTTTTTAATAAGGCGGTTCAGATTCTTACTCACGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTGAAAACGCTTCTTGACATTTTGGCCAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAGCTTCAGCTCTTAAACCGGTCAGTGAAAAGGAGGTGCAGGCAGATGGTTGACTTACTTGTTCATTATCATGTATCTGGCGTTGGTGATTCAGAGAAAAAATACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACTCCTCTGCATTTGGCAGCGTCAATGGCAGATGCAGAAAATTTGGTTGATGCTCTAACAAATGACCCGCTAGAGATTGGTTTGGAATGCTGGAGTTCCCAACTTGATGAAAGTGGAAGGTCGCCACAGGCTTATGCTTTAATGAGGGGTAATCATAATTGTAATGAGCTGGTGAAGCGAAAACTTGCTGACAGAAAGAATGGTCAAGTTTCAGTTAGAATTGGGAATGAGATAGAACAGCTAGAGGTGTCAAGTGGTGAGCGGGGGAGGGTGAAAGGTAGGTCCTGCTCCAGATGTGCTGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACACACAGGTTACTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCTGTTTGCGTTTGTGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTAGGCTATGGGACAATTTAG 3096 45.12 MDDPGAQVVPPIFIHQSLTSRYTDLPSIPKKRPLSYHQGQLHPHTWNPKAWDWDSSKFLTKPSNLNNTTLDDHDDTLRLNLGGRYVEDPVSKPPKKVRPGSPASVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLAASAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSSPPLLQTLFPVQSTEETTSNGKMPIRKEVNGVEVRKPPSSNIPFELFRELDGARPNSFQTIHYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFEKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWERLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQLASHKDGKIHLNKSSKAWSNPELTSVSPLAVVSGQKTSFLLRGRNLKIPGTRIHCTSMGGYISEEVMGLSSLGLSSEGIYDEIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFDEFKVPDSSLESHSSVSSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISELQLLNRSVKRRCRQMVDLLVHYHVSGVGDSEKKYLFPPNFIGPGGITPLHLAASMADAENLVDALTNDPLEIGLECWSSQLDESGRSPQAYALMRGNHNCNELVKRKLADRKNGQVSVRIGNEIEQLEVSSGERGRVKGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI* 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26359110 26365159 + CsaV3_4G037760.1 Csa04g02750 528360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02750 1031 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
Csa04g02750 1031 MobiDBLite consensus disorder prediction 314 417 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 264 289 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 267 289 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 314 338 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 190 206 - -
Csa04g02750 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 1031 IPR044817 GO:0003677
Csa04g02750 1031 SUPERFAMILY SBT domain 108 188 IPR036893 GO:0003677|GO:0005634
Csa04g02750 1031 Pfam SBP domain 110 183 IPR004333 GO:0003677
Csa04g02750 1031 Gene3D - 101 171 IPR036893 GO:0003677|GO:0005634
Csa04g02750 1031 MobiDBLite consensus disorder prediction 391 417 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 346 363 - -
Csa04g02750 1031 MobiDBLite consensus disorder prediction 176 206 - -
Csa04g02750 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 38 1031 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02750 - - - csv:101219733 1966.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02851 Csa-Chr3:27286153 Csa04g02750 Csa-Chr4:26359110 7.43E-37 dispersed
Csa04g02332 Csa-Chr4:23787743 Csa04g02750 Csa-Chr4:26359110 1.20E-36 dispersed
Csa04g02750 Csa-Chr4:26359110 Csa03g03589 Csa-Chr3:32029162 2.34E-32 dispersed
Csa04g02750 Csa-Chr4:26359110 Csa06g00818 Csa-Chr6:6551819 3.19E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50670 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50670 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31652 PF03110 SBP 3.50E-29 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02750 Csa_Chr04 FPKM 8.614718 8.169606 136.04747 134.473328 0.803892 1.133079 1.331751 348.763092 333.117828 342.374298