Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa04g02750 | ATGGACGACCCCGGTGCCCAAGTCGTTCCTCCTATTTTCATCCACCAATCCTTGACTAGTCGCTACACTGATCTCCCTTCCATCCCCAAGAAGCGTCCCTTATCCTATCATCAGGGTCAACTCCATCCCCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCTCTAAATTCCTCACCAAACCCTCCAACCTAAACAACACCACTCTCGATGACCACGATGACACTCTTCGCCTTAATCTTGGTGGTCGTTACGTTGAGGACCCTGTTTCCAAACCCCCCAAAAAGGTCCGCCCTGGATCTCCCGCCTCTGTCACCTACCCTATGTGCCAAGTCGATAATTGTAAGGAAGATCTCTCCAATGCCAAAGACTATCATCGCAGACACAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGAGGTTCTGCCAGCAGTGCAGCAGATTTCACCCTCTTTCCGAATTTGATGATGGGAAGAGGAGCTGTAGGAGGAGGCTTGCGGGGCACAACTGGCGTAGAAGGAAGACACAGCCCGAGGATGTAACCTCAAGGCTGACCCGGCCAGGAAGTAGAGGACCCCCAAGCACTGGAAATCTTGACATCGTCAGTCTATTAACTGTTCTAGCTAGGGCTCAAGGCAAAAACGAAGACCAGAGCGTGAAGAGCTTGTTGTCAGCAAATAGTGACCAGCTCATTCAGATCCTCAATAAGATCAATTCACTTCCTTTACCAGCTGACCTTGCAGCGAAGTTGCCCAATTTAGAGAATTTTAAGGGGAAGGCTCCTCCACAAAGTTCTCTTCAGCATCAAAACAAATTAAATGGTAATCCGTCTTCTCCTTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCCGCATCAGCTCCGGATGCTCTTGCAATGCTGTCACAGAAGAGCAGTGTCAGTAGTGATAGTGAAAAAACAAGGTCATCCTGCCCATCTGGTTCTGATCTTCAGAATAGGCCTCTGGAACTTCCTTCAGTTGGAGGAGAAAGAAGCAGTACCAGTTACCAGTCTCCCATGGAAGATTCCGATGGGCAGGTTCAAGGAACCCGAGTTGGTTTGCCACTTCAGCTCTTTGGCTCTTCGCCAGAACATGATGCCCCACCGAACTTGACCGCTTCTAGAAAGTACTTCTCTTCGGATAGCAGCAATCCTATTGAAGAGAGGTCTCCATCATCTTCACCTCCTCTCCTGCAAACGTTGTTCCCCGTGCAAAGCACGGAAGAAACTACCAGTAATGGGAAAATGCCAATCAGAAAAGAAGTTAATGGTGTTGAGGTTCGAAAACCTCCTAGTAGCAATATTCCCTTTGAACTTTTCAGAGAGTTGGATGGAGCAAGACCAAATTCGTTTCAAACTATTCATTACCAAGCTGGATACACTTCTTCCGGGTCTGATCATTCACCTTCTAGCTTAAATTCTGATGCTCAGGATCGCACTGGAAGGATAAGTTTTAAGCTTTTTGAAAAGGATCCCAGTCAGTTTCCAGGGACGTTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCATCTGAGATGGAAAGCTACATACGGCCTGGTTGCGTGGTTCTGTCGGTTTATATGTCCATGTCATCCATTGCATGGGAACGGCTTGAAGAAAATTTGGTTCTGCATCTTAAATCTTTGGTTCATAGTGAAGAGCTTGATTTTTGGAGAAGTGGAAGATTTTTAGTTTATACTGGGAGGCAACTAGCGTCACACAAGGATGGAAAGATTCATCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAGTTAACCTCAGTGTCACCTTTGGCAGTTGTGAGCGGACAAAAGACCTCATTTTTATTAAGGGGAAGGAATTTGAAAATTCCTGGCACCAGGATCCATTGCACATCTATGGGAGGCTACATATCTGAAGAAGTAATGGGATTAAGTAGTCTGGGATTAAGTAGTGAGGGAATTTACGACGAAATACATTCTAGAAGTTTCAAAGTTGGAGATGTATCACCTACTACTCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAATAGTTTCCCTGTTATCATAGCCGATGCTACCATCTGTAGGGAATTAAGGCATCTTGAGTCCGATTTTGATGAGTTTAAAGTACCTGATAGCAGTTTAGAAAGTCATTCATCTGTTTCTTCGCAACCAAGGCTAAGGGATGAAATTTTGCAGTTCTTGAATGAACTTGGATGGCTGTTCCAAAGGGAAAGGTTCTCTTATGAGCTAGATAATCCAGATTTTTTAATAAGGCGGTTCAGATTCTTACTCACGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTGAAAACGCTTCTTGACATTTTGGCCAAAAAATGCTTGATCACAGATGGACTGTCAATGAAATCATTGGAGATGATATCTGAGCTTCAGCTCTTAAACCGGTCAGTGAAAAGGAGGTGCAGGCAGATGGTTGACTTACTTGTTCATTATCATGTATCTGGCGTTGGTGATTCAGAGAAAAAATACCTCTTTCCACCAAATTTTATTGGTCCTGGTGGTATTACTCCTCTGCATTTGGCAGCGTCAATGGCAGATGCAGAAAATTTGGTTGATGCTCTAACAAATGACCCGCTAGAGATTGGTTTGGAATGCTGGAGTTCCCAACTTGATGAAAGTGGAAGGTCGCCACAGGCTTATGCTTTAATGAGGGGTAATCATAATTGTAATGAGCTGGTGAAGCGAAAACTTGCTGACAGAAAGAATGGTCAAGTTTCAGTTAGAATTGGGAATGAGATAGAACAGCTAGAGGTGTCAAGTGGTGAGCGGGGGAGGGTGAAAGGTAGGTCCTGCTCCAGATGTGCTGTTGTTGCAGCAAGGTGCAACAGGAGGGTTCCTGGGAGTGGGACACACAGGTTACTTCATCGGCCCTACATTCATTCAATGCTTGCTATAGCTGCTGTTTGCGTTTGTGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTAGGCTATGGGACAATTTAG | 3096 | 45.12 | MDDPGAQVVPPIFIHQSLTSRYTDLPSIPKKRPLSYHQGQLHPHTWNPKAWDWDSSKFLTKPSNLNNTTLDDHDDTLRLNLGGRYVEDPVSKPPKKVRPGSPASVTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVTSRLTRPGSRGPPSTGNLDIVSLLTVLARAQGKNEDQSVKSLLSANSDQLIQILNKINSLPLPADLAAKLPNLENFKGKAPPQSSLQHQNKLNGNPSSPSTMDLLTVLSATLAASAPDALAMLSQKSSVSSDSEKTRSSCPSGSDLQNRPLELPSVGGERSSTSYQSPMEDSDGQVQGTRVGLPLQLFGSSPEHDAPPNLTASRKYFSSDSSNPIEERSPSSSPPLLQTLFPVQSTEETTSNGKMPIRKEVNGVEVRKPPSSNIPFELFRELDGARPNSFQTIHYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFEKDPSQFPGTLRTQIYNWLSNCPSEMESYIRPGCVVLSVYMSMSSIAWERLEENLVLHLKSLVHSEELDFWRSGRFLVYTGRQLASHKDGKIHLNKSSKAWSNPELTSVSPLAVVSGQKTSFLLRGRNLKIPGTRIHCTSMGGYISEEVMGLSSLGLSSEGIYDEIHSRSFKVGDVSPTTLGRCFIEVENGFRGNSFPVIIADATICRELRHLESDFDEFKVPDSSLESHSSVSSQPRLRDEILQFLNELGWLFQRERFSYELDNPDFLIRRFRFLLTFSAERDFCALVKTLLDILAKKCLITDGLSMKSLEMISELQLLNRSVKRRCRQMVDLLVHYHVSGVGDSEKKYLFPPNFIGPGGITPLHLAASMADAENLVDALTNDPLEIGLECWSSQLDESGRSPQAYALMRGNHNCNELVKRKLADRKNGQVSVRIGNEIEQLEVSSGERGRVKGRSCSRCAVVAARCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLGYGTI* | 1032 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26359110 | 26365159 | + | CsaV3_4G037760.1 | Csa04g02750 | 528360 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa04g02750 | 1031 | ProSiteProfiles | Zinc finger SBP-type profile. | 107 | 184 | IPR004333 | GO:0003677 | |
Csa04g02750 | 1031 | MobiDBLite | consensus disorder prediction | 314 | 417 | - | - | |
Csa04g02750 | 1031 | MobiDBLite | consensus disorder prediction | 264 | 289 | - | - | |
Csa04g02750 | 1031 | MobiDBLite | consensus disorder prediction | 267 | 289 | - | - | |
Csa04g02750 | 1031 | MobiDBLite | consensus disorder prediction | 314 | 338 | - | - | |
Csa04g02750 | 1031 | MobiDBLite | consensus disorder prediction | 190 | 206 | - | - | |
Csa04g02750 | 1031 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 38 | 1031 | IPR044817 | GO:0003677 | |
Csa04g02750 | 1031 | SUPERFAMILY | SBT domain | 108 | 188 | IPR036893 | GO:0003677|GO:0005634 | |
Csa04g02750 | 1031 | Pfam | SBP domain | 110 | 183 | IPR004333 | GO:0003677 | |
Csa04g02750 | 1031 | Gene3D | - | 101 | 171 | IPR036893 | GO:0003677|GO:0005634 | |
Csa04g02750 | 1031 | MobiDBLite | consensus disorder prediction | 391 | 417 | - | - | |
Csa04g02750 | 1031 | MobiDBLite | consensus disorder prediction | 346 | 363 | - | - | |
Csa04g02750 | 1031 | MobiDBLite | consensus disorder prediction | 176 | 206 | - | - | |
Csa04g02750 | 1031 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 | 38 | 1031 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g02851 | Csa-Chr3:27286153 | Csa04g02750 | Csa-Chr4:26359110 | 7.43E-37 | dispersed | |
Csa04g02332 | Csa-Chr4:23787743 | Csa04g02750 | Csa-Chr4:26359110 | 1.20E-36 | dispersed | |
Csa04g02750 | Csa-Chr4:26359110 | Csa03g03589 | Csa-Chr3:32029162 | 2.34E-32 | dispersed | |
Csa04g02750 | Csa-Chr4:26359110 | Csa06g00818 | Csa-Chr6:6551819 | 3.19E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31652 | PF03110 | SBP | 3.50E-29 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa04g02750 | - | - | csv:101219733 | 1966.43 |