Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02752 ATGTATATATTTTTTTTAATCAGTGTATTCATTCCATCATCTCTTCGCTCCGCACAGTCCAAAATGCTGCATCTTCTTCTGCCATTCATTGTTTTAGTATCTTCTTGTGCAGCCGCCGTTGACACCAAGCCTGGATGTCCTTCCAACTGTGGAAATGTAACCGTTCCCTATCCTTTCGGCATTGGCTTTGGTTGTTACATGGCTACCGGGTTTGACATAACTTGCAATTCTACCTATGACCCTCCATTACCATTCCTAGGCACCTCTAACCTTCAAGTTGAGGAAATTTCTGAAGCTAACCTACGCATACGCAACTTTGTTTCTTTCAATTGCTACACGCAAACTGGGGCTCTCACCAAGTCATCCGCGTCCTCGATCAACTTGGGCCACCTCCCTATGTTCTTCTCCACCGCCAACAAGTTCACTGTCATCGGTTGTGACACCATGGCCTTGATCACTGGCTCTGAGGGGCTTTTCTACACCAGTGGATGCGTCTCCCTCTGCTCCAGCAAGGAAACCGTGATCAATGGCTCCTGTTCTGGCATCGGGTGCTGTCAGACAGACGTCCCCAGAGGCCTGAAGCGCTTTCAGAGCATGATTGGGAACCTTAACAACCATACCAAAACCTGGCAGTACAATCCTTGCAGCTACGCCTTCCTGGTTGACCGAGACCGCTACACCTTCCAGGTTTCTGATCTTGCGGATCCCAACGTTATATCCACCATTAAAAGCTTGCCAGTGGTTCTGGATTGGGTGGTGGGTAACAGGACGTGTGAAGAGGCTCGGAAAGAATTGTCAACTTACGTTTGTCAGGCCAATTCTGAATGCTACGATTCAGAGAGCGAAAGCGGTTATCAATGTCGATGCAGCCGAGGTTTCAGTGGAAACCCATATCTGAGTTCTGGATGCCAAGACATTGACGAGTGTGCAGGTCCCAACAACCCTTGCGAGGGCATCTGCGTGAATACCCCTGGCAGCTATTATTGCTCATGTCCCCACGGTTCTTACGGTGATGGTAAGAAGGAGGGCAAGGGTTGTATTAACAAAACCAAGCAATTTCCACTTATTCAACTCACTGTTGGTCTTGCCTCCACTCTTCTCTTTCTTGTCGTCACAGCCACTTGGCTTTACTTCACCATCAAAAAGAGGAATCTCATTAAACTCCGAGAGAAATTCTTCCACCAAAACGGGGGCTTCTTGTTGCGCCAGCAGTCATCCCAACACGAAGCTGCCGTCGACTCCACAAAAATCTTCACAGCAGAGGAGCTGGAGAAAGCGACCGACAATTATGCAGAGACTCGTATTCTGGGCAGAGGTGGAAACGGAACTGTATACAAAGGAATTCTGCCCGACGGCAAAACAGTGGCCATTAAGAAATCCAAGATAGCGGATAAAAGCCAAATTGAACAATTCATCAATGAAGTCATAATTCTGACCCAAATCAAACACCGAAATGTGGTGAAGCTGATGGGATGCTGCCTAGAGACGGAGGTTCCTCTGCTGGTGTATGAATTCGTGTCAAATGGGACTCTACATAGCCATATTCATGACGAGAACAGGTTTAATAATAATTCTCTGTCTTGGGAAGACCGGATGAGAATAGCAACAGAAACGGCAGGAGCTCTTGCGTACCTGCACTCGGCCGCGTCCGTGCCCATCATTCACAGAGACGTGAAGTCGGCGAACATACTGTTGGACAGGAAATGCACTGCAAAAGTGGCCGATTTTGGAGCATCGAAGTTTATCCCGATGGATCAGTCGCAGATCACGACGCTGGTTCAGGGGACGTTTGGTTACTTAGACCCGGAATATTTTCAAACGAGTCAGTTGACGGAGAAGAGCGATGTGTACAGCTTTGGGGTGGTACTGGTAGAGCTGTTGACGGGGGAGCTACCGGTATCGTTCGAGAGATCGGAAACGGAGAGAAATCTGTCGTCGTATTTTGTAGCGTCTTTGCGAGAAAAGAGGTTGTTTAGGATACTTGATGGGAGAGTGCTGAGGGAGGGAAAGAGAGAGCAAGTGATAGCAGCAGCGGAGCTAGCAAGGAGATGCTTGAAGCTAAAGGGTGAAGATAGGCCGAGGATGAGAGAGGTTGTTTCTGAGTTGGAAAGGTTAACAATGAAAAGTGAGGGTGTGAATGTAAGCGATACACAACCTTTGTTGGAAGTGGAACAATATTCGGATTTGTACCCCATTCACACTTCTTCCACTTTTTAA 2217 47.77 MYIFFLISVFIPSSLRSAQSKMLHLLLPFIVLVSSCAAAVDTKPGCPSNCGNVTVPYPFGIGFGCYMATGFDITCNSTYDPPLPFLGTSNLQVEEISEANLRIRNFVSFNCYTQTGALTKSSASSINLGHLPMFFSTANKFTVIGCDTMALITGSEGLFYTSGCVSLCSSKETVINGSCSGIGCCQTDVPRGLKRFQSMIGNLNNHTKTWQYNPCSYAFLVDRDRYTFQVSDLADPNVISTIKSLPVVLDWVVGNRTCEEARKELSTYVCQANSECYDSESESGYQCRCSRGFSGNPYLSSGCQDIDECAGPNNPCEGICVNTPGSYYCSCPHGSYGDGKKEGKGCINKTKQFPLIQLTVGLASTLLFLVVTATWLYFTIKKRNLIKLREKFFHQNGGFLLRQQSSQHEAAVDSTKIFTAEELEKATDNYAETRILGRGGNGTVYKGILPDGKTVAIKKSKIADKSQIEQFINEVIILTQIKHRNVVKLMGCCLETEVPLLVYEFVSNGTLHSHIHDENRFNNNSLSWEDRMRIATETAGALAYLHSAASVPIIHRDVKSANILLDRKCTAKVADFGASKFIPMDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLVELLTGELPVSFERSETERNLSSYFVASLREKRLFRILDGRVLREGKREQVIAAAELARRCLKLKGEDRPRMREVVSELERLTMKSEGVNVSDTQPLLEVEQYSDLYPIHTSSTF* 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26366177 26368495 + CsaV3_4G037780.1 Csa04g02752 528362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02752 738 ProSiteProfiles EGF-like domain profile. 261 304 IPR000742 -
Csa04g02752 738 SMART egf_5 308 347 IPR000742 -
Csa04g02752 738 SMART egf_5 257 304 IPR000742 -
Csa04g02752 738 Gene3D Laminin 256 307 - -
Csa04g02752 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 553 565 IPR008271 GO:0004672|GO:0006468
Csa04g02752 738 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 35 705 IPR045274 GO:0007166
Csa04g02752 738 CDD STKc_IRAK 436 705 - -
Csa04g02752 738 Gene3D Laminin 308 348 - -
Csa04g02752 738 SUPERFAMILY EGF/Laminin 303 347 - -
Csa04g02752 738 Pfam Calcium-binding EGF domain 305 342 IPR001881 GO:0005509
Csa04g02752 738 Gene3D Phosphorylase Kinase; domain 1 400 505 - -
Csa04g02752 738 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524
Csa04g02752 738 Gene3D Transferase(Phosphotransferase) domain 1 506 723 - -
Csa04g02752 738 ProSitePatterns Calcium-binding EGF-like domain signature. 305 329 IPR018097 GO:0005509
Csa04g02752 738 Pfam Wall-associated receptor kinase galacturonan-binding 46 103 IPR025287 GO:0030247
Csa04g02752 738 ProSiteProfiles EGF-like domain profile. 305 338 IPR000742 -
Csa04g02752 738 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 320 331 IPR000152 -
Csa04g02752 738 Pfam Protein kinase domain 430 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02752 738 ProSiteProfiles Protein kinase domain profile. 430 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02752 738 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE 35 705 - -
Csa04g02752 738 SMART serkin_6 430 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02752 738 CDD EGF_CA 305 338 - -
Csa04g02752 738 Pfam Wall-associated kinase 177 290 IPR013695 GO:0004674|GO:0016021
Csa04g02752 738 SUPERFAMILY Protein kinase-like (PK-like) 409 703 IPR011009 -
Csa04g02752 738 SMART egfca_6 258 304 IPR001881 GO:0005509
Csa04g02752 738 SMART egfca_6 305 347 IPR001881 GO:0005509
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02752 Csa-Chr4:26366177 Csa07g01122 Csa-Chr7:10925810 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78204 PF00069 Pkinase 8.30E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02752 - - csv:101219978 1489.55