Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02754 ATGGAAGAGATTGCGCTAGAAAAAGAACACGGAGGAGAATCGGAGTCCTCTTGTCTTACAGCAAGACAATTGCAAGAAGCAGTTGACGCTCATCCTGATGATCCCTCATCCCATTTCAAACTCGGGATTTTCATGTGGGAAAATGGAGCAAGCCACGATAAGGCGGCTGCTGCCGATCATTTTCTGAAATCAGCGAAATTAGACCCTGGGAATGCTGCCGCTTTCAAGTATCTAGGGGATTATTACGCCACATCTTCTGTCGATATCCAAAGGGCTCTCAAGTGCTACCAAAGAGCTGTCAGTCTCGACGTCGACGATTTCCACTCTGGAGAAGCATTGTGCGATCTGTTGCATCACGAAGGAAAGGAGAGTATAGAGGTTGCCGTATGCAAAGAGGCTTCCTCTAAGTCACCCAAGGCCTTCTGGGCTTTCCGGAGGTTGGGATATTTGCAGGTTTATCAAAATAAATGGACTGAAGCTGTCTCAAGTCTTCAGCATGCCATTCGAGGATATCCTCATTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCATATCAGCGACTTGGCAGGTTTACTGCTGCAATTAAGTCTTATGCACGGGCTATTGAAATTGAAGGAGATAGAATTCTCGCTTGGATTGAGAGTGGAAACATCTTCTTGATGCTTGGTTTGTTCAAAAAAGGAGTTGAACACTTTCAGCAAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTTCTTGGTTGGGCGAAGGAATACATTAATAGGGGGGCATTTAAATGGGCATCCTTTCTATTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACTCATTTAGCTGGAAACTCATCATGTATCTGGAAGTTGCTTGGAGATATTCAGCACACGTATGCAAAATGTTATCCATGGATGGAGGACAACTGGGGACAATGCTCAGAATCCTTTAGAACTTCTATCCTTTCCTGGAAGCAGACTCGCATGTTGGCTTTATTTTCTGCCAAAAGTTCCTATCAGCAAGCTCTGCACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATAATATTTCATCTTTCAATGATAATTCTGGACCTGGATTCAATTCCTGGCAGATATCTGAAAAGATGACACTAGGGGCCTTGATGCTCGAGGGTGACAATCATGAATTCTGGGTGGCAATGGGATGCATCTCTAACCATGCTGCGTTGAAGCAACATGCTTTTATAAGGGCATTGCAGTTAGATGGATCTTTAGCTGGAGCATGGGCTTATCTTGGGAAGCTATACTGGAATAGGTGCGAGAAGCAATTGGCGAGACAGGCTTTTGATTATGCCAGAAGTATAGATCCTTCTCTAGCATTACCCTGGGCGGGCATGTCAGCTGATTTGAACGTTAGGGAGTCCACATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCCAAGCTTTCTCTGCAGGCAGGCCATCTTTCATCTCCACAGGTGTTTGGAGCTATACGTCAAGCTGTTCAACTGGCACCTTGTTACCCCGAATCCTATAATCTAAATGGATTAGCTTTTGAGGCACAATTAGATTATCAATCTGCTGTTGCTGCTTATCGTTTGGCACACCTCACAATTAGCCACTTTTCAGATAGAGTTCCAAGGTCTCATGTCAGAGATATATCGATCAACTTAGCGAGATCACTCTGCATGGTAGGAAATTTCTTTGAAGCTTTGCAGGAATGTGAAAATTTGAGTACAGAAGGCATGCTCGACATTGAAGGTTTGCAGGTTTATGCTTTCTCTCTATGGAAACTAGGAAAGAACGACCAGGCCCTTAGTGCTGTGAGAACACTTGCTTCTGGCATCTCTACCATGGAAAGCACACGTACTGCTGCATCTATTGATTTCATATGCAGATTGTTGTGTTCAATATCTGGATTGGACTCTGCAATTAACAGTATTACGAAGATGCCGACCAATTTTTTCCAGAGTTCAAAATTGAGTTTTGTAGTGGCTGCTGTTCATGCCCTTGATCAGGGTGATCGGCTTGAGGCCATTGTCTTAAGCAGCCGTTCCTGCCTCCAATCTCATGAAGAAATTACTAGAATGCACAGTTTGATTGCTCTTTCTAAGCTGATCAAATATCGAACAAATAACTGCCTTGGATTCCTCAATGGAGTGATGCATCTTCGAAAAGCACTTCATGCATACCCCAGCAGTAGTTCGATCAGGAACTTGCTTGGTTATCTTTTGTTGTCCAACGAAGAAAGGGATGACAATCACACAGCTACTAGGTGCTGCAACATGTTGTATGGTTTGGACCAACAGAACAAAGGTCTGAAATCTGCGTATGAAATTCATGGTGCTGGAGCTGTGGCCTGCTATACAATTGGCACGAGTCATCCGAGGTTTTCGTTCCCAACATGTTCATATCAGTGCCGGAACGGGATTGGGACCATCCGGCAACTTCAAAAATGCTTACGTCAAGAGCCATGGAATTATGATGCTCGATATCTTCTTATACTAAACATTCTGCAAAAGGCACGTGAAGAAAGATTTCCCTGTCATCTGTGTGTGACTATTGGGCGACTAATCTTGGTTGCCTTTTTTGATGAGGCATATTTTACGAAAGATGTGTCTCATCAATATAAGAAGTTTCAGCTTCTACTTTGTGCCTCTGAGATCAGTTTGCAAGGTGGTGACCAAATTAAATGCATCAACTATGCCAAAGCTGCTTCCTCTATGTCACTTCCTGAAATTTATCTTTTTTATGCGCACTTGTTACTGTGCCGAGCCTATGCTGCAGAAAATGATTCTAACAACCTCCGTAAAGAGTTCATGAAATGTTTGAATTTGAAGACAGATAACTATCTTGGATGTGTATGTCTTAAATTCATTGCATCTCGATACGAGCTTCACGATGAATCCAACATCTTAGAACTTAGTTTGAAAAAATGGTCGGCAGAGAGCAAGAATCTGCAACACATGGTAATACCCATGTTTGTCGATGGTTTGATATCTTTTAGGAGTCAGGATTTTATGGCTGCAGAGAAGTATTTTGCACAAGCTTGTTTTTCTGGACATGATGGCTGTCTCTTCCTCTGTCATGGTGTAACCTGCATGGAACTTGCGAAGAAGCTTTGCAGTCCTCATTTTTTGAGGCTGGCTGTGAACAGTCTCCTTAAAGCTCAAGTGATTTCTGTTCCAATACCAATTGTCTCGATCATGCTGGCACAAGCAGAAGGGAGTCTTGGTTTGAAGGAAAATTGGGAGTCAGGCCTTCGTTTGGAATGGTTCTCGTGGCCACCAGATACGAGGTCTGCGGAGATCTTGTTTCAAATGCATCTGCTTGCAAAACAGTCAAAAGTTGATTCTGATCAATTGAGGGTTGAATTATGTCAGTCTCCTCTGAGATGGGTTCTTCGTGCTATCCATGTAAACCCTTCTTGTGTGAGATATTGGAATGTGCTCCAAAGCTTGTGGAATGAGGGATGA 3555 43.32 MEEIALEKEHGGESESSCLTARQLQEAVDAHPDDPSSHFKLGIFMWENGASHDKAAAADHFLKSAKLDPGNAAAFKYLGDYYATSSVDIQRALKCYQRAVSLDVDDFHSGEALCDLLHHEGKESIEVAVCKEASSKSPKAFWAFRRLGYLQVYQNKWTEAVSSLQHAIRGYPHCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWIESGNIFLMLGLFKKGVEHFQQALEISPKSITAQFGLSSGLLGWAKEYINRGAFKWASFLLEEASKVARGSTHLAGNSSCIWKLLGDIQHTYAKCYPWMEDNWGQCSESFRTSILSWKQTRMLALFSAKSSYQQALHLAPWEANIYTDIAITLDNISSFNDNSGPGFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHAALKQHAFIRALQLDGSLAGAWAYLGKLYWNRCEKQLARQAFDYARSIDPSLALPWAGMSADLNVRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQECENLSTEGMLDIEGLQVYAFSLWKLGKNDQALSAVRTLASGISTMESTRTAASIDFICRLLCSISGLDSAINSITKMPTNFFQSSKLSFVVAAVHALDQGDRLEAIVLSSRSCLQSHEEITRMHSLIALSKLIKYRTNNCLGFLNGVMHLRKALHAYPSSSSIRNLLGYLLLSNEERDDNHTATRCCNMLYGLDQQNKGLKSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCRNGIGTIRQLQKCLRQEPWNYDARYLLILNILQKAREERFPCHLCVTIGRLILVAFFDEAYFTKDVSHQYKKFQLLLCASEISLQGGDQIKCINYAKAASSMSLPEIYLFYAHLLLCRAYAAENDSNNLRKEFMKCLNLKTDNYLGCVCLKFIASRYELHDESNILELSLKKWSAESKNLQHMVIPMFVDGLISFRSQDFMAAEKYFAQACFSGHDGCLFLCHGVTCMELAKKLCSPHFLRLAVNSLLKAQVISVPIPIVSIMLAQAEGSLGLKENWESGLRLEWFSWPPDTRSAEILFQMHLLAKQSKVDSDQLRVELCQSPLRWVLRAIHVNPSCVRYWNVLQSLWNEG* 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26380202 26391418 + CsaV3_4G037800.1 Csa04g02754 528364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02754 1184 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Csa04g02754 1184 SUPERFAMILY TPR-like 395 561 IPR011990 GO:0005515
Csa04g02754 1184 Gene3D Tetratricopeptide repeat domain 19 290 IPR011990 GO:0005515
Csa04g02754 1184 Gene3D Tetratricopeptide repeat domain 336 641 IPR011990 GO:0005515
Csa04g02754 1184 ProSiteProfiles TPR repeat profile. 209 242 IPR019734 GO:0005515
Csa04g02754 1184 SMART tpr_5 175 208 IPR019734 GO:0005515
Csa04g02754 1184 SMART tpr_5 72 106 IPR019734 GO:0005515
Csa04g02754 1184 SMART tpr_5 141 174 IPR019734 GO:0005515
Csa04g02754 1184 SMART tpr_5 209 242 IPR019734 GO:0005515
Csa04g02754 1184 SMART tpr_5 431 464 IPR019734 GO:0005515
Csa04g02754 1184 SMART tpr_5 535 568 IPR019734 GO:0005515
Csa04g02754 1184 SUPERFAMILY TPR-like 21 245 IPR011990 GO:0005515
Csa04g02754 1184 ProSiteProfiles TPR repeat region circular profile. 175 205 - -
Csa04g02754 1184 ProSiteProfiles Rhodanese domain profile. 99 166 IPR001763 -
Csa04g02754 1184 SUPERFAMILY TPR-like 525 636 IPR011990 GO:0005515
Csa04g02754 1184 Pfam Tetratricopeptide repeat 147 202 - -
Csa04g02754 1184 PANTHER SUPERKILLER 3 PROTEIN-RELATED 21 873 IPR039226 GO:0006401|GO:0055087
Csa04g02754 1184 ProSiteProfiles TPR repeat profile. 431 464 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02754 K12600 SKI3, TTC37; superkiller protein 3 - csv:101220693 2391.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02754 Csa-Chr4:26380202 Csa01g03386 Csa-Chr1:30559712 5.16E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g17 . Blo12g00835 . Bda03g00340 . Bpe04g00300 Bma04g00309 . . . . Cma09g00007 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0003 . Csa04g02754 . . . . . . . . . . . . Cmo09g00008 . . . Car09g00007 . . . . . . . . . . . . . . . . . . . Cme07g00008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02754 Csa_Chr04 FPKM 13.919691 15.874202 8.175681 6.940777 7.733305 9.000299 8.219665 10.931775 11.08679 10.983169