Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02758 ATGGTGAAGGAGACAGAATACTATGATGTGCTTGGAGTCAGCCCCGCGGCTACGGAAGCCGAAATCAAGAAAGCTTATTACATCAAGGCACGGCAGGTTCATCCAGATAAAAACCCAAGTGACCCACTGGCAGCACAGAAATTTCAGGTTCTGGGAGAAGCTTACCAAGTATTAAGTGATCCAGCTCAAAGACAAGCCTATGATGCTCATGGGAAGTCTGGAATCTCAACTGATGCAATTATTGATCCTGCAGCGATTTTTGCAATGCTTTTTGGAAGTGAACTTTTTGAGGAATACATAGGTGAGCTTGCCATGGCATCGATGGCTTCTTTGGACATTTTCACTGAAGGGGAGCAATTTGATGCTAAACGGTTGCAGGAGAAAATGAGGATTGTCCAAAAGGAAAGAGAAGAAAAGCTTTCAGAAATTCTGAAAGGTCGTCTGAATCAGTATGTTCAAGGAAACAAAGATGATTTTGTTAATCATGCTGAAGCTGAAGTAGCAAGACTCTCCAACGCAGCCTATGGAGTTGACATGTTAAACACAATTGGCTATATATATGCCAGACAGGCTGCTAAAGAGCTTGGGAAGAAGGCAATTTATTTGGGCGTGCCATTTGTTGCTGAGTGGTTTAGAAACAAAGGACACTTTATAAAATCCCAGGTCACAGCAGCCACAGGTGCTATTGCATTGATTCAACTGCAGGAGGACATGAAAAAGCAACTTAGTGCTGAAGGAAATTATACTGAAGAAGAGCTTGAAGAGTACGTGCAATCTCATAAAAAGTTGATGATTGATTCCCTATGGAAATTGAACGTGGCTGACATTGAGGCCACTCTTTCCCGTGTCTGTCAACAGGTTCTTCAAGACAACAACGTCAAGAAGGAGGAGCTCCGTGCAAGAGCGAAGGGACTGAAAACTCTTGGTAAAATTTTCCAGAGGGTGAAGTCAACCAATGGAAATGAGGGTGAACCGGCAGTAAAAGGCTCAGTAGACAAACTGAATGGAAGTGAATCAAGTCATGATGCTTCCCCAATTTCAACATTGAAATCTTCCGGCTATGAAGAAACATCTTTTGCAACACAGAGTCCCTATGTGGAGGCTCCCAATTTTGCAGGTGCACACTTAAATAACTATTTCCCCAGGCCAACACCCCCTCCAGGTGCACAGAGACATCCGTCCTCCAGCAGGGATTGA 1197 43.78 MVKETEYYDVLGVSPAATEAEIKKAYYIKARQVHPDKNPSDPLAAQKFQVLGEAYQVLSDPAQRQAYDAHGKSGISTDAIIDPAAIFAMLFGSELFEEYIGELAMASMASLDIFTEGEQFDAKRLQEKMRIVQKEREEKLSEILKGRLNQYVQGNKDDFVNHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSAEGNYTEEELEEYVQSHKKLMIDSLWKLNVADIEATLSRVCQQVLQDNNVKKEELRARAKGLKTLGKIFQRVKSTNGNEGEPAVKGSVDKLNGSESSHDASPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPPGAQRHPSSSRD* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26406598 26434108 - CsaV3_4G037840.1 Csa04g02758 528368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02758 398 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 363 - -
Csa04g02758 398 Gene3D DnaJ domain 1 83 IPR036869 -
Csa04g02758 398 CDD DnaJ 6 60 IPR001623 -
Csa04g02758 398 Coils Coil 122 142 - -
Csa04g02758 398 MobiDBLite consensus disorder prediction 374 398 - -
Csa04g02758 398 MobiDBLite consensus disorder prediction 317 357 - -
Csa04g02758 398 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 1 363 - -
Csa04g02758 398 Pfam X-domain of DnaJ-containing 133 324 IPR026894 -
Csa04g02758 398 SUPERFAMILY Chaperone J-domain 2 99 IPR036869 -
Csa04g02758 398 SMART dnaj_3 5 63 IPR001623 -
Csa04g02758 398 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Csa04g02758 398 PRINTS DnaJ domain signature 8 26 IPR001623 -
Csa04g02758 398 PRINTS DnaJ domain signature 26 41 IPR001623 -
Csa04g02758 398 PRINTS DnaJ domain signature 43 63 IPR001623 -
Csa04g02758 398 PRINTS DnaJ domain signature 63 82 IPR001623 -
Csa04g02758 398 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Csa04g02758 398 MobiDBLite consensus disorder prediction 333 357 - -
Csa04g02758 398 Pfam DnaJ domain 6 68 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02758 - - - csv:101221160 772.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01283 Csa-Chr2:12501857 Csa04g02758 Csa-Chr4:26406598 5.58E-134 dispersed
Csa04g02758 Csa-Chr4:26406598 Csa07g02043 Csa-Chr7:19800188 1.54E-14 dispersed
Csa07g00122 Csa-Chr7:1073894 Csa04g02758 Csa-Chr4:26406598 2.00E-09 dispersed
Csa04g02758 Csa-Chr4:26406598 Csa06g01925 Csa-Chr6:17359485 1.00E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa04g02758 Csa_Chr04 FPKM 31.196159 35.450958 14.893414 13.626947 29.826599 31.60652 29.981428 12.485418 12.642157 12.021485