Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa04g02769 ATGGGCTTCTATACGGTAAAATGGCAATGGCTACTGATTCTTCACATTGTACCACTCTGCATGATAATGAGCAGAAGCAGTGGTATCACTTCTGATGGTGAGGCACTTTTGAGCTTCAGAGCATCAATTCTTGATTCTGATGGCGTTCTTCTTCAGTGGAAGCCAGAGGAGCCCCATCCTTGTAAATGGAAAGGAATAACGTGTGATCCGAAAACCAAGAGAGTGATATATTTGAGTCTTCCTTATCACAAACTTAGTGGATCATTATCCCCTGAACTTGGAAAGCTTGACCACCTAAAAATTTTAGCTCTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGGAATTGCTCACAGTTGCAGGGAATGTTCCTGCAGGGTAATTACTTTAGTGGGTCCATTCCCAATGAATTAGGGAATCTTTGGGCACTTAAAAATTTAGATATTTCAAGTAACTCACTCGGTGGAAATATTCCCATTTCGCTGGGGAAGTTGAGCAATCTTGTTAGTCTAAACGTGTCTGCCAATTTTCTGGTTGGAACAATTCCAAATGTTGGCATGCTGCTCAACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGTGGGAAGCAAATAAATGTTATGTGCAAAGATGACAAAAAGGAACCTGAAACTAATGAGTCGCCATTCTCAGTGCAAAATCAAATTGGGAAGAAAAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTCTACTACTGGTTGCCCTAATGTGTTTCTGGGGTTGCTTTCTGTATAAAAAGTTCGGCAAAAATGACAGTAAAGGTTTAGTGCTGAATGGCTGTGGAGGTGCTCGTGCTTCAGGTGTAATGTTTCACGGAGACTTGCCATACATGTCTAAAGATATTATTAAGAAATTTGAGACGTTGAATGAAGAACACATAATAGGATGCGGGGGCTTTGGAACCGTGTACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATTATAAAATTGAACGAGGGCTTTGATCGTTTTTTTGAGAGAGAGCTTGAGATCCTTGGAAGCATAAAGCACAGGTTTCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGGGGCAGCCTTGATGAGGCACTACACGGCCTCCGTACTGAAGGATCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCACCGCGAATCATTCACCGAGACATAAAGTCAAGTAACATTCTACTTGATGCTAATTTGGAGGCTCGAGTTTCTGACTTTGGACTTGCGAAACTCTTAGAGGATGAAGAATCACATATCACGACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTATATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTATACAGTTTTGGAGTATTGGTACTTGAAGTTTTGAGTGGCAAACGTCCCACAGATGCCTCATTTATTGAGAAGGGGCTAAACATTGTTGGTTGGTTGAACTTTCTAGTCACAGAGAATCGACAACGAGAAATAGTCGACTTACAGTGTGAGGGCATGCAAGCAGAGAGCTTGGATGCATTGCTTTCAGTTGCCATCAGATGTGTTTCGTCGAGTCCAGAGGAACGACCAACTATGCACAGAGTGGTCCAGATTCTGGAATCTGAGATTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTGA 1800 41.83 MGFYTVKWQWLLILHIVPLCMIMSRSSGITSDGEALLSFRASILDSDGVLLQWKPEEPHPCKWKGITCDPKTKRVIYLSLPYHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGMFLQGNYFSGSIPNELGNLWALKNLDISSNSLGGNIPISLGKLSNLVSLNVSANFLVGTIPNVGMLLNFSESSFLGNRGLCGKQINVMCKDDKKEPETNESPFSVQNQIGKKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLNGCGGARASGVMFHGDLPYMSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIIKLNEGFDRFFERELEILGSIKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGLRTEGSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDLQCEGMQAESLDALLSVAIRCVSSSPEERPTMHRVVQILESEIMTPCPSDFYDTD* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26547824 26558182 - CsaV3_4G037950.1 Csa04g02769 528379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa04g02769 599 ProSiteProfiles Protein kinase domain profile. 312 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02769 599 SMART serkin_6 312 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02769 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Csa04g02769 599 ProSitePatterns Protein kinases ATP-binding region signature. 318 344 IPR017441 GO:0005524
Csa04g02769 599 PANTHER RECEPTOR-LIKE PROTEIN 55 4 597 - -
Csa04g02769 599 SUPERFAMILY Protein kinase-like (PK-like) 298 583 IPR011009 -
Csa04g02769 599 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 4 597 IPR031071 GO:0004672|GO:0005524|GO:0030244
Csa04g02769 599 Gene3D Transferase(Phosphotransferase) domain 1 388 590 - -
Csa04g02769 599 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Csa04g02769 599 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
Csa04g02769 599 Pfam Protein kinase domain 314 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa04g02769 599 Gene3D Phosphorylase Kinase; domain 1 289 387 - -
Csa04g02769 599 SUPERFAMILY L domain-like 29 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00795 Csa-Chr1:5031577 Csa04g02769 Csa-Chr4:26547824 1.23E-149 dispersed
Csa04g00692 Csa-Chr4:4698595 Csa04g02769 Csa-Chr4:26547824 0 dispersed
Csa04g02246 Csa-Chr4:23097432 Csa04g02769 Csa-Chr4:26547824 7.79E-101 dispersed
Csa04g02769 Csa-Chr4:26547824 Csa06g03712 Csa-Chr6:29681231 4.11E-108 dispersed
Csa04g02769 Csa-Chr4:26547824 Csa01g00213 Csa-Chr1:1379747 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78205 PF00069 Pkinase 7.20E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa04g02769 - - csv:101211605 1211.82