Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa04g02777 | GATGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGATTTTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGGGACAAAGTTTGAGGCTGCTTGTAAATGGGGCAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGCCAGAGAAAGATTGTCTCTCTTGATTTGTATCGCCCAAAAGAAGTTAAAGCTCAAGACAGAGCGACAGGCTTATGCACTGTCAGCCAATTTCCTACTCAAGCTGCCCCAATGATAGCCAATGAAAGCATATCCCAGTTTCCTATCCATTCTGCCATTCCGAGAGACCAATCAGCTGGAACTAACAGTAGCTTTATAGGAGCAGCTGAACGAATAAGTTCTACGAAGAAAAGCGCAAGTTCTTTGACGAAGCCATAG | 543 | 42.36 | DGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKFEAACKWGKQCITAEWIYECVSQRKIVSLDLYRPKEVKAQDRATGLCTVSQFPTQAAPMIANESISQFPIHSAIPRDQSAGTNSSFIGAAERISSTKKSASSLTKP* | 181 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 26755059 | 26755736 | - | CsaV3_4G038030.1 | Csa04g02777 | 528387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa04g02777 | 180 | Gene3D | BRCT domain | 25 | 118 | IPR036420 | - | |
| Csa04g02777 | 180 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 1 | 144 | - | - | |
| Csa04g02777 | 180 | Pfam | twin BRCT domain | 29 | 90 | IPR001357 | - | |
| Csa04g02777 | 180 | ProSiteProfiles | BRCT domain profile. | 25 | 108 | IPR001357 | - | |
| Csa04g02777 | 180 | CDD | BRCT_TopBP1_rpt2_like | 23 | 95 | - | - | |
| Csa04g02777 | 180 | SMART | BRCT_7 | 22 | 98 | IPR001357 | - | |
| Csa04g02777 | 180 | SUPERFAMILY | BRCT domain | 21 | 109 | IPR036420 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g01777 | Csa-Chr4:17422137 | Csa04g02777 | Csa-Chr4:26755059 | 1.92E-125 | dispersed | |
| Csa04g02777 | Csa-Chr4:26755059 | Csa05g01376 | Csa-Chr5:14556179 | 1.34E-24 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa04g02777 | K10728 | - | csv:116403448 | 352.829 |