Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00002 ATGGAAGCCACGGCTGCAGCGCGTGGTGCTTCTCTCACCATGCATTCTCCCCAGCTCTCCCGCCAAGAATGGCGAGCCGTTGCTGACAATCACTCCGCCCGAGATGCCGCCGATGAGGAAATGGAAAGAGCAAAGTTGACACAGTCGGATGAAAGGACTATATATGAGGTGCAGCAGGGAAGGGAACCCCTTCATGTTGACTTCTGTTCAATTTCAATTGATGGGAATCCAGATAATGATATTTTGCAGCGGCGGCTCAATGATGTTGCTAGACAAAGAGAGGATCTTCAACAGATGGAGATAGAACTTAGAGCACAAGTTATTGCAAGATCAGAAATATTGGAAATGCAAAAGAGTTTTGATGGTCAAATGAAAGAACACAGTAATGCTGCCATCAAGATGCAGGAACAACTATGTGAAAGAGACCAGGCTATTCGCGAACTGGAAAGGAAAATAGAAGATAAAGATAGGGAATTGCAATCAATTAAATTAGACAACGAAGCGGCTTGGGCCAAGGATGATCTTCTGCGGGAACAAGATAAAGAAATAGCGACTTACAGGAGAGAACGTGATCATTCTGAAGCCGAAAGAGCTCAGCAAATAAAACAATTGCATGAACTTCAAGAACACATTCATGAGAAAGAGCGGCAGCTTCTTGAGTTACAGGAGCAGCATAGGATTGCTCAAGAAACCATTTTGTACAAAGATGAACAATTGAGGGAAGCCCATGCTTGGATTGCTCGTGTCCAGGAAATGGACGCTTTGCAATCAACTACTAACCATTCCTTACAGGCTGAATTGCGTGAACGTACAGAGCAGTATAACCAGCTATGGCTTGGTTGCCAGCGCCAGTTTGCAGAGATGGAGAGGCTTCACGTGCATGCCTTGCAACAACTCCAACTTGAGTTGGCTGATGCAAGGGAAAGAAGTGGGACTTACAATGACGAGTCGAATATATCTCAGGCAAATTCTAAGGATGTACCACAATATGGACAAACCACTGGTAACCAATTAGGTGGAGCAGCTTCAACTGGGAATAATGGGGCACTGCCAAATGGGAATCCAGAAAATGTTTCATCTTTTAATTTGACTAGCAATTCATCTATCCAGATTGACCATGTATCTGGAGTTCCAATGGCTCCATCATCTCTCCCCGGGATGCCACCCTATCTTCCACCTGGGCAGATGGCGGCTCTGCATCCTTTTTTGATGCATCAACCAGGAGTTCCTCATTCTGTACCATCCCAAGTTCCTCAATCTCACATGGGGCATTTTTCATCATTACCAACTTTATCATCCATCCAACCATGGCAGACTGATCAGATTGTTTCAGAGGGTTCCACTGTATCTGTTCAGAATGAACTTCAGTCAACTCAAAATGTTCAAGGCATTATGACATCAAGTGCTAATTACCCATACGAAATGGCTGATAATGGGCAAGCTCTGGAACCAGATTATCTGGATGTTCATACCAGCAAAAGAAGAGAATCTGATTCAGGGCTTTCCTTGTCCACTGGAGAAACACAGCTTGAATCGGTGGATAGAGGATACCAAGTACCCCTACAACCTGATACAAGCTTGCAACATGTTACCTCTCAATTTCATGATGCTTTAAGGATTGGTTCCACTTCTATTCAGCACAAGAATGAAAAGGATCAAAATGATTTGGGTGCAGGTGATCAAGTTCTCGAGGAGCAAGGGTTAAGTGGGGGAAAATTAAGTCCTGCTGTCAGTACATTAACCTTTGCTTCTTCCTCCGTTCACAATGTAAATGTCAATGAAATGGCTATCAACAATGCTTCCGGATCTGGGGCGGTTGTACCTGAAGCTTTTGTTTCTTCTGCGCTGAAAATTCCAATGATGGTGGGGAAGACATCAGAAACTGCCCTCCTTGATGAAAGAGCATTATTGGCTTGCATTGTTCGCACTATTCCAGCTGGTGGTAGAATTCAAATAAGTTCAACACTGCCGAATAGGCTGTGCAAGATGCTTGCACCTTTACATTGGCGTGATTATGAGAAGAAGTATGGTAAGCTCGAAGACTTCGTAGCTGGTCATCCAGAATTATTTGTGATTGAGGGCGATTATATTCAGCTTCGTGAAGGAGCACAGAAGACAATAGCAGCTACTGCAGCTTTTGCTAAGGTTGCCGCCGCAGCTGCGGCTTCATCTCATTATTCATCACATTTGCCTTCTGTTGCTATGACCCCAATGGCTCATACTAATCGGTCAAAGAGGATTTCATCTGCTGATTCAAAAAACATGAAATCCGAGAAGACTTCTGTTTTTACTCCAAATATGACGAAGGATTCTCCTCTGGGCATACAAATGAAGAATCAACCTAAAAATGGTTTTCATTCGCCTGCTGGTGGAGGCCTATTGAACGTAAAACTTTTCACAAGATCAAAGGATAGTCGTGAACTGAATGTCTCGGAAGCCAAACCTGGTGAATCATCCGTGTTTTTAGGGTTTGAAAATGGGGCCGCTCTTGATAGAACATCAAGTGGGAGCAGTCAAAGCTTACCTTTGACTGATGGGAGGTCTAGTGCCAATTTTTCTGGGAAACATCAGGGGAGGATGGCTGCTGCTTCGTTGCCTTCAAGAAGATAA 2610 44.1 MEATAAARGASLTMHSPQLSRQEWRAVADNHSARDAADEEMERAKLTQSDERTIYEVQQGREPLHVDFCSISIDGNPDNDILQRRLNDVARQREDLQQMEIELRAQVIARSEILEMQKSFDGQMKEHSNAAIKMQEQLCERDQAIRELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYRRERDHSEAERAQQIKQLHELQEHIHEKERQLLELQEQHRIAQETILYKDEQLREAHAWIARVQEMDALQSTTNHSLQAELRERTEQYNQLWLGCQRQFAEMERLHVHALQQLQLELADARERSGTYNDESNISQANSKDVPQYGQTTGNQLGGAASTGNNGALPNGNPENVSSFNLTSNSSIQIDHVSGVPMAPSSLPGMPPYLPPGQMAALHPFLMHQPGVPHSVPSQVPQSHMGHFSSLPTLSSIQPWQTDQIVSEGSTVSVQNELQSTQNVQGIMTSSANYPYEMADNGQALEPDYLDVHTSKRRESDSGLSLSTGETQLESVDRGYQVPLQPDTSLQHVTSQFHDALRIGSTSIQHKNEKDQNDLGAGDQVLEEQGLSGGKLSPAVSTLTFASSSVHNVNVNEMAINNASGSGAVVPEAFVSSALKIPMMVGKTSETALLDERALLACIVRTIPAGGRIQISSTLPNRLCKMLAPLHWRDYEKKYGKLEDFVAGHPELFVIEGDYIQLREGAQKTIAATAAFAKVAAAAAASSHYSSHLPSVAMTPMAHTNRSKRISSADSKNMKSEKTSVFTPNMTKDSPLGIQMKNQPKNGFHSPAGGGLLNVKLFTRSKDSRELNVSEAKPGESSVFLGFENGAALDRTSSGSSQSLPLTDGRSSANFSGKHQGRMAAASLPSRR* 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18479 29620 + CsaV3_5G000020.1 Csa05g00002 528389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00002 869 MobiDBLite consensus disorder prediction 830 855 - -
Csa05g00002 869 PANTHER OS08G0543600 PROTEIN 14 868 - -
Csa05g00002 869 Coils Coil 176 231 - -
Csa05g00002 869 Coils Coil 79 106 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 734 791 - -
Csa05g00002 869 PANTHER OS08G0543600 PROTEIN 14 868 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 491 511 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 313 355 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 11 25 - -
Csa05g00002 869 Coils Coil 134 165 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 310 355 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 829 869 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 754 783 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 1 49 - -
Csa05g00002 869 MobiDBLite consensus disorder prediction 27 49 - -
Csa05g00002 869 Coils Coil 296 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00002 - - - csv:101218478 1659.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01876 Csa-Chr3:14474795 Csa05g00002 Csa-Chr5:18479 5.93E-07 dispersed
Csa05g00002 Csa-Chr5:18479 Csa06g01647 Csa-Chr6:14483651 6.48E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004264 2 4 2 2 2 0 2 1 0 1 1 1 1 1 1 2 1 2 2 0 1 1 1 1 1 0 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00002 Csa_Chr05 FPKM 38.355724 42.996185 3.942802 3.968539 4.223982 4.685051 4.707248 3.639465 3.642788 3.975511