Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00004 ATGGCTTCAACTCTTTCCTCTTCTCCTTCACTTCTGTTGTCCTTCAAACCCAGACCCCTCAAGAAAATCCCTCCGCCACGAGTCACGGTCCTGCCTTTGAGGGTGAGAGCTGAGGCTGGAGCCAGCAGCGGCAACAGCAAAGATACATCTTTGGAGGTTCATGTCAATCCAAGTAGCCAGGGCCAGGGAACGTCCGTGGAAAGACGGCCGGGGTCCAAGCGGCTAGCCCTGGACATTTCACCTTATGGAATTCTAGACCCTCTGTCTCCAATGAGGACGATGAGGCAAATGCTGGAGACAGTGGACAGGTTATTCGATGACGCAGTAATGATGACGCCAGGATTGAGATGGAACAGGGGTGGGGTCCGAGCTCCTTGGGACATTGAAGAGCACGAAAACGAAATCAGGATGCGCTTTGACATGCCTGGCCTCTCCAAGGAATATGTCAAGGTTTCTGTTGAAGACAATTTTTTGATTATAAAAGGCGGCCATGAGGCTGAGACCTCCAACACCAGCAGCAATGATGACGGCTGGTCCACAAGGAATGCCTCTGCCTACCACACCCGCCTCCAACTTCCTGATGGCGTTGACAAAGACAACATCAAGGCTCAGCTTACCAATGGCGTTCTTTACATTACACTTCCCAAAATCAAAGTCCAACGCAAGGTCATGGATATAGAGATCCAGTAA 690 50.87 MASTLSSSPSLLLSFKPRPLKKIPPPRVTVLPLRVRAEAGASSGNSKDTSLEVHVNPSSQGQGTSVERRPGSKRLALDISPYGILDPLSPMRTMRQMLETVDRLFDDAVMMTPGLRWNRGGVRAPWDIEEHENEIRMRFDMPGLSKEYVKVSVEDNFLIIKGGHEAETSNTSSNDDGWSTRNASAYHTRLQLPDGVDKDNIKAQLTNGVLYITLPKIKVQRKVMDIEIQ* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35597 38762 + CsaV3_5G000040.1 Csa05g00004 528391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00004 229 CDD ACD_sHsps-like 127 216 - -
Csa05g00004 229 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 117 229 IPR002068 -
Csa05g00004 229 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 10 229 IPR044587 GO:0009408
Csa05g00004 229 Pfam Hsp20/alpha crystallin family 127 229 IPR002068 -
Csa05g00004 229 Gene3D - 83 229 IPR008978 -
Csa05g00004 229 PANTHER HEAT SHOCK PROTEIN 21, CHLOROPLASTIC 10 229 - -
Csa05g00004 229 SUPERFAMILY HSP20-like chaperones 92 227 IPR008978 -
Csa05g00004 229 MobiDBLite consensus disorder prediction 42 67 - -
Csa05g00004 229 MobiDBLite consensus disorder prediction 39 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00004 K13993 HSP20; HSP20 family protein - csv:101210285 422.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00277 Csa-Chr3:2251829 Csa05g00004 Csa-Chr5:35597 1.79E-23 dispersed
Csa03g00278 Csa-Chr3:2255195 Csa05g00004 Csa-Chr5:35597 3.03E-23 dispersed
Csa05g00004 Csa-Chr5:35597 Csa05g02242 Csa-Chr5:25114220 9.56E-29 dispersed
Csa05g00004 Csa-Chr5:35597 Csa03g03133 Csa-Chr3:29181040 8.58E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g976 . . . . . . . . . . . Cma15g00997 . Car15g00933 . . . . . . . . . . Cla01g00012 Cam01g0012 Cec01g0011 Cco01g0013 Clacu01g0013 Cmu01g0013 Cre09g2492 . . . . . Csa05g00004 Chy09g01476 . . . . . . . . . . . Cmo15g01062 . . . . . Cpe13g00336 Bhi12g00695 . . . Hepe06g0826 . . . . . . . . . . . . Cme09g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014143 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00004 Csa_Chr05 FPKM 35.987514 34.09692 34.134022 32.331112 21.124405 21.492567 23.260551 12.473415 13.887342 16.933002