Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00007 ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGGGGGAGGGAGGGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGGACGTTTGGGATCGTTGATTATACTAACTACGACGACATGAAATATGCTATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCAGGAGTAGAAGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAGCCGAAGCCGAAGCCGAAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCAGAACGACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCTCCTATTAAATCTTCAAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGCACGAGAAGGAAGCGAGTGA 912 48.25 MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRRRRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGSE* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42567 51326 + CsaV3_5G000070.1 Csa05g00007 528394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00007 303 MobiDBLite consensus disorder prediction 272 292 - -
Csa05g00007 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 207 IPR000504 GO:0003723
Csa05g00007 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Csa05g00007 303 MobiDBLite consensus disorder prediction 228 260 - -
Csa05g00007 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Csa05g00007 303 Gene3D - 142 220 IPR012677 -
Csa05g00007 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Csa05g00007 303 SUPERFAMILY RNA-binding domain, RBD 6 213 IPR035979 GO:0003676
Csa05g00007 303 SMART rrm1_1 144 213 IPR000504 GO:0003723
Csa05g00007 303 SMART rrm1_1 8 78 IPR000504 GO:0003723
Csa05g00007 303 Gene3D - 2 90 IPR012677 -
Csa05g00007 303 CDD RRM2_SF2_plant_like 143 218 - -
Csa05g00007 303 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 302 - -
Csa05g00007 303 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 302 - -
Csa05g00007 303 MobiDBLite consensus disorder prediction 219 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00007 K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1 - csv:101210036 380.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00007 Csa-Chr5:42567 Csa07g01837 Csa-Chr7:18516881 9.75E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00007 Csa_Chr05 FPKM 11.776256 10.501981 15.527751 14.655841 13.398418 14.523772 13.449581 15.518415 19.96973 27.735859