Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00009 ATGGGCGAGGCCGTGGTCCTGAGCTCTGAGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACAGCGACGATATGGCAGATGCAGAGAGTATGGGCACTCACAGACCTAACAGAGATTGCAGTTCAAGTGGATTTGGGATCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTTGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTCCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAAATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCAGAAGTTGAATTGCCGTCAATCTCTGGATTTGCTCTCCTAACTCTGATCATGGGGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTACAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAACCTGTGGCAACATGTTTGGAGAAGACAAGCGTCATCCAATGTGAGAGCTGACATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACCGCAAGCAATCACTCAACTGGTTATGTTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGAAGTGATACTCAGAGCTCTTGTACAAAGGTAGATTTCGAACCTGGAAATAAGATACAGGAAAATTCACAGTCTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCCACAAAAAGATGAACGTCACATCAATTTGAGTCAAAGATTGTTTATGCATGAAAATGAAACTGGAGGATTGGCAATGAGTTGCTATGTCAATACTGATTTACCAATCACACTAAGCATGGGTCTTGAGCCAATCAATGATGGGAGAAGTCCTAATATTGCTAGTGAAGCGGGTCATGATAAGGATCTGTTTGCCAATCCATCCAGAGATGCAACTGCCTCGAATCATGCCCGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCAACAATTTTGCCGCAAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAACGATTTTGAGGAGCGTGCTGCAGGACAGGCTACTCTCAAACATTCTAGTGCTTCAGCTTTTACAAGATACACTTTCAGGCCGTTGCAATCACTTCAAGCAAAATCAAGCAGCATCTGTGATGAGCAAAAGGAAACTGAAAGCAACCCTGATCATGTTGGAAGTATGGGTGCTACTTCTACCTCTGATACCATTAATCCCACGCCAAATCTTCAAAAGAGTAGTACTTCTATGCCTATGATCACGAGTCAATCTACTCAGTCTGAAGTTGCTAAATCAAGTACGTCAGAGACGGCAATCCCTCTTCAAGTTTCAGGGACAGATTTGATGTCTAATAATCAACGCTCAGGCTCAGGCCATGGCTCTTTACCTTCTCACAACTTCTGCGCACAACTGGGTAGCCCATCATCTCCATGCCGAACTTCAGTCACCCATCCAGAACTCATCTTTGGAAAACAGACGGTTTATCCTTTAAACCTTGAGAATCATAAATTGGAGCAATTTCTGAACCAGCATCGCATCTTAAGCAGTCCAGCAAGCAGAAAGATAGAGAATTCTGGCCAGTCTCCGGAAAATCAAGGCCATATATCCCCAACCACTGATCACAGTGCAAACAGTAATGTATGGCGTGGTAATACAACTCATGTTGGAAGCCTGGGCTATCCTAGCCCCTGCGGAAGCAACAGCAATGTAGATCGAGTTGGCATTGCAAGGGTTACATCTGAGAGTAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGATTCTTATCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCGAGAGTGAAGGGACAGTTTGTCCGGAGAGTATTGACTGATCCATTGCCTGCAGAAACCAATGACAATACATCCAACGGTTAG 2091 44.38 MGEAVVLSSEDVDVDVDYVRLHSDDMADAESMGTHRPNRDCSSSGFGIGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMGHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRADIQEKVEVTSENETASNHSTGYVAGVQRNNKNIEKGSDTQSSCTKVDFEPGNKIQENSQSRQGKASPNDFKPQKDERHINLSQRLFMHENETGGLAMSCYVNTDLPITLSMGLEPINDGRSPNIASEAGHDKDLFANPSRDATASNHARIKYPDNYQKSSPSNNFAANNFGSALHLDLSLRRCQPNDFEERAAGQATLKHSSASAFTRYTFRPLQSLQAKSSSICDEQKETESNPDHVGSMGATSTSDTINPTPNLQKSSTSMPMITSQSTQSEVAKSSTSETAIPLQVSGTDLMSNNQRSGSGHGSLPSHNFCAQLGSPSSPCRTSVTHPELIFGKQTVYPLNLENHKLEQFLNQHRILSSPASRKIENSGQSPENQGHISPTTDHSANSNVWRGNTTHVGSLGYPSPCGSNSNVDRVGIARVTSESRNEEALFSQGGDSYRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVLTDPLPAETNDNTSNG* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 54545 59025 + CsaV3_5G000090.1 Csa05g00009 528396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00009 696 MobiDBLite consensus disorder prediction 411 472 - -
Csa05g00009 696 Pfam CCT motif 637 679 IPR010402 GO:0005515
Csa05g00009 696 SMART REC_2 61 176 IPR001789 GO:0000160
Csa05g00009 696 MobiDBLite consensus disorder prediction 197 257 - -
Csa05g00009 696 ProSiteProfiles Response regulatory domain profile. 62 180 IPR001789 GO:0000160
Csa05g00009 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR 45 671 IPR045279 GO:0009736
Csa05g00009 696 MobiDBLite consensus disorder prediction 555 590 - -
Csa05g00009 696 Pfam Response regulator receiver domain 63 174 IPR001789 GO:0000160
Csa05g00009 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 45 671 - -
Csa05g00009 696 Gene3D - 59 249 - -
Csa05g00009 696 MobiDBLite consensus disorder prediction 197 266 - -
Csa05g00009 696 ProSiteProfiles CCT domain profile. 637 679 IPR010402 GO:0005515
Csa05g00009 696 MobiDBLite consensus disorder prediction 425 472 - -
Csa05g00009 696 SUPERFAMILY CheY-like 55 185 IPR011006 -
Csa05g00009 696 CDD psREC_PRR 63 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00568 Csa-Chr1:3658056 Csa05g00009 Csa-Chr5:54545 1.18E-14 dispersed
Csa04g01435 Csa-Chr4:14305828 Csa05g00009 Csa-Chr5:54545 8.31E-19 dispersed
Csa05g00009 Csa-Chr5:54545 Csa02g01797 Csa-Chr2:17338517 3.73E-23 dispersed
Csa06g02147 Csa-Chr6:19229914 Csa05g00009 Csa-Chr5:54545 3.94E-10 dispersed
Csa05g00009 Csa-Chr5:54545 Csa01g01861 Csa-Chr1:15634051 4.06E-24 transposed
Csa05g00009 Csa-Chr5:54545 Csa02g00244 Csa-Chr2:1638210 2.76E-24 transposed
Csa05g00009 Csa-Chr5:54545 Csa06g01765 Csa-Chr6:15531730 3.97E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31653 PF00072 Response_reg 2.30E-20 CL0304 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00009 K12130 - csv:101209788 1373.99