Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00015 ATGGAGCAGGGTAAACAAGGAGTGGTAGTTAAATTGCCTCCGCATCAGAACCCCGTGGAGCAGATTCAGGCTCGTTTCAAGGAACTAGAAAATGGGTTCAGGACGTGGTTGGCTAAGCAATCTCTCCCAGTTGAGGCCGCTGTTGTCACCGTCACCAGCGCTGCGCAGGGCGCTGCTATTGGTGGCTTTATGGGCACTCTCACCAACGACGTTTCTTCTTCTCTCCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCTTCTTTCAAGCAGGCCCAGGCTCTTGCTGGAGGTCCCTTAGTACAAGCTCGCAACTTTGCCGTCATGACAGGTGTTAATGCTGGCATATCTTCTGTTATGAAGAGACTAAGAGGCAAGGAGGATGTCCAGTCAAGCATGGTGGCTGCTTTTGGGTCTGGGGCAATGTTTTCACTGGTGAGTGGCATGGGAGGTCCAAATCAGGCGACAAACGCGGTTACATCTGGTCTTTTTTTTGCCCTCGTTCAAGGTGGACTTTTCAAGTTAGGGGAAAAGTTTTCTCAACCACCTGTGGAAGATGTGTACTATGCTAAAACAAGAAGCATGTTGAATAACCTTGGACTACAAAGTTATGAGAAGAATTTCAAGAAAGGCTTATTGACCGATACCACTTTGCCGCTGCTCACTGATAGTGCGCTTAGAGATGTCAAGATTCCCCCAGGACCAAGGCTACTCATTCTGGATCACATTCAGAGGAACCCAGAGCTAAGAGAGAGATGA 762 49.48 MEQGKQGVVVKLPPHQNPVEQIQARFKELENGFRTWLAKQSLPVEAAVVTVTSAAQGAAIGGFMGTLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSVMKRLRGKEDVQSSMVAAFGSGAMFSLVSGMGGPNQATNAVTSGLFFALVQGGLFKLGEKFSQPPVEDVYYAKTRSMLNNLGLQSYEKNFKKGLLTDTTLPLLTDSALRDVKIPPGPRLLILDHIQRNPELRER* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 75640 90027 - CsaV3_5G000150.1 Csa05g00015 528402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00015 253 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 1 246 IPR039175 GO:0042721|GO:0045039
Csa05g00015 253 Pfam SAM domain (Sterile alpha motif) 197 246 IPR001660 GO:0005515
Csa05g00015 253 Gene3D - 193 252 IPR013761 -
Csa05g00015 253 PANTHER CHLOROPLASTIC IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT HP30-2 1 246 - -
Csa05g00015 253 Pfam Tim17/Tim22/Tim23/Pmp24 family 47 168 - -
Csa05g00015 253 SUPERFAMILY SAM/Pointed domain 188 247 IPR013761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00015 - - - csv:101208652 474.552
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g931 . Blo15g00003 . . . Bpe07g01106 . . . . Cma02g01149 Cma15g00993 . . . Cpe05g00574 . . . . . . . . . . . . . . . Cone1ag1044 Cone5ag0754 . . . Csa05g00015 Chy09g01465 . . . . . . . . . . . . . . . . . Cpe13g00341 . . . . . . . . . . . . . . . . . Cme09g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007153 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 0 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00015 Csa_Chr05 FPKM 8.49749 8.143418 1.155479 1.618389 35.603252 36.34565 33.435532 0.106292 0.0 0.190556