Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00021 ATGGCTTCCTCCACACTCACCCCCTCCTGCTTCGGATCCTTTGCCGCGGCCGCATCCAACAAGACTTCCTATTCTTCTCCGGCGGCTTTCAAGCCACTCAAGCTTCCTCTCTTTTGGCCATGGCAGAAGGTAAAAATGGGCCCTCTGAGTGTTTCCCCTATGGGATTTGGAACTTGGGCGTGGGGGAACCAGCTCTTGTGGGGCTACCAGGAATCTATGGACTCTGAGCTTCAACACATTTTCAATTTGGCTGTGGATAATGGAATCAATCTCTTCGACACCGCGGATTCTTATGGCACTGGAAGATTGAATGGCCAAAGCGAAAAGCTACTTGGAAAATTTATCCGACAGTCTCAAGTTAAAAATGACATTGTGATAGCCACCAAGTTTGCAGCATATCCATGGCGCCTAACACCTGCACAATTTGTCAAAGCTTGCCAGGGGTCTTTGGAGCGAATGCAGATTGAAAAAATTGGTATAGGACAATTACATTGGTCAACAGCAAACTATGCTCCTTTACAGGAGATGGCTCTTTGGGATGGGCTAGTAGCAATGTATGATAAGGGATTAGTTCAAGCAGTTGGAGTAAGCAACTATGGACCAAAACAACTAGTAAGGATACATGACTACCTCAAAGACCGAGGAGTTCCCTTATGCACTGCTCAGGTGCAATTTTCTTTGCTGAGCATAGGCGATGATCAGCTGGAGATTAAGAAGATATGTGATTCTTTGGGCATTCGCTTAATAGCTTACAGTCCTCTGGGATTGGGAATGCTTACAGGAAAATACTCACCTTCCAAGCTTCCATCTGGACCTCGAGGTTTGCTATTCAGGCAAACTCTACCAGGATTGGAACCACTACTGACTACACTTGGAGACATTGCAGAGAAAAGACGCAAAACAATACCGCAAGTCGCCATAAACTGGTGCATATCCAAAGGGACCATACCCATACCTGGAGCTAAGACATTAAAACAAGCTCAGGAAAATTTGGGTGCTCTAGGCTGGAACCTTACTCAAGAGGAATTGAACCTGTTGGACGATGGAGCTCGAGAGTCCCCTCGGAAGATGATACAGAATATTTTCCAAACAAGGTAA 1098 45.9 MASSTLTPSCFGSFAAAASNKTSYSSPAAFKPLKLPLFWPWQKVKMGPLSVSPMGFGTWAWGNQLLWGYQESMDSELQHIFNLAVDNGINLFDTADSYGTGRLNGQSEKLLGKFIRQSQVKNDIVIATKFAAYPWRLTPAQFVKACQGSLERMQIEKIGIGQLHWSTANYAPLQEMALWDGLVAMYDKGLVQAVGVSNYGPKQLVRIHDYLKDRGVPLCTAQVQFSLLSIGDDQLEIKKICDSLGIRLIAYSPLGLGMLTGKYSPSKLPSGPRGLLFRQTLPGLEPLLTTLGDIAEKRRKTIPQVAINWCISKGTIPIPGAKTLKQAQENLGALGWNLTQEELNLLDDGARESPRKMIQNIFQTR* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 99876 102581 - CsaV3_5G000210.1 Csa05g00021 528408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00021 365 PANTHER PYRIDOXAL REDUCTASE, CHLOROPLASTIC 31 358 - -
Csa05g00021 365 SUPERFAMILY NAD(P)-linked oxidoreductase 49 349 IPR036812 -
Csa05g00021 365 ProSitePatterns Aldo/keto reductase family signature 2. 182 199 IPR018170 GO:0016491
Csa05g00021 365 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 31 358 - -
Csa05g00021 365 Gene3D - 43 354 IPR036812 -
Csa05g00021 365 CDD AKR_AtPLR-like 51 347 - -
Csa05g00021 365 Pfam Aldo/keto reductase family 53 347 IPR023210 -
Csa05g00021 365 PRINTS Aldo-keto reductase signature 84 108 IPR020471 GO:0016491
Csa05g00021 365 PRINTS Aldo-keto reductase signature 148 166 IPR020471 GO:0016491
Csa05g00021 365 PRINTS Aldo-keto reductase signature 182 199 IPR020471 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00021 K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] - csv:101218000 733.021
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02183 Csa-Chr4:22614352 Csa05g00021 Csa-Chr5:99876 5.23E-56 dispersed
Csa04g02184 Csa-Chr4:22625686 Csa05g00021 Csa-Chr5:99876 8.87E-77 dispersed
Csa05g00021 Csa-Chr5:99876 Csa05g00940 Csa-Chr5:7655037 5.50E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g987 Blo06g01053 . . . . . . . . . . Cma15g01005 . Car15g00939 . . . . . . . . . . Cla01g00019 Cam01g0018 Cec01g0016 Cco01g0020 Clacu01g0019 Cmu01g0018 Cre09g2489 . . . . . Csa05g00021 . . . . . Bda15g00795 . Bpe12g00339 Bma08g00397 . . . Cmo15g01068 . . . . . Cpe13g00331 Bhi12g00686 . . . . . . . . . . . . . . . . Cme09g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012223 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00021 Csa_Chr05 FPKM 21.145895 19.68194 38.76757 39.621136 53.324146 56.33313 51.868847 66.742859 72.128578 70.319946